naikai / sake
sake
☆27Updated 2 years ago
Alternatives and similar repositories for sake:
Users that are interested in sake are comparing it to the libraries listed below
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Bead-based single-cell atac processing☆32Updated 3 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- R package with motifs for use with chromVAR☆27Updated 7 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 3 weeks ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- R/Bioconductor package for working with 10x scATACseq data☆39Updated last year
- ☆28Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆47Updated 3 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆44Updated 8 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆17Updated 3 years ago
- ☆16Updated 6 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- ☆33Updated 5 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Reconstruction of higher order chromatin from scRNA-seq and scATAC-seq☆14Updated 3 weeks ago
- ☆20Updated 6 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆34Updated 4 years ago