VCCRI / CIDRLinks
Clustering through Imputation and Dimensionality Reduction
☆63Updated 8 years ago
Alternatives and similar repositories for CIDR
Users that are interested in CIDR are comparing it to the libraries listed below
Sorting:
- easy access to benchmark datasets☆50Updated 7 years ago
- ☆29Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- consistent quantification of external RNA-seq data sets☆58Updated last year
- ☆55Updated 7 months ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆35Updated 7 years ago
- Biclustering algorithm☆57Updated 7 years ago
- Generate cellular maps of differentiation manifolds with complex topologies.☆27Updated 7 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆56Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆45Updated 9 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 6 years ago
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆106Updated 2 years ago
- post-clustering differential expression test☆36Updated 6 years ago
- A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍☆76Updated 4 years ago
- ☆85Updated 5 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆45Updated 8 years ago
- ☆56Updated 5 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆42Updated 5 years ago
- Normalization for single cell RNA-seq data☆48Updated 3 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Single-cell Scalable Visualization and Analytics☆26Updated 6 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆84Updated this week
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Updated last year
- R package to identify genes with differential distributions in single-cell RNA-seq☆33Updated 3 years ago