Python library to identify Identical By State regions
☆25Mar 19, 2023Updated 3 years ago
Alternatives and similar repositories for IBSpy
Users that are interested in IBSpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆21Dec 13, 2024Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆40Sep 24, 2026Updated 2 weeks ago
- ☆27Jul 26, 2026Updated 2 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- ☆32Nov 25, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A library for running k-mers based GWAS☆130Oct 29, 2024Updated last year
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 5 years ago
- ☆27Jul 28, 2025Updated last year
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 10 months ago
- This is a tool for speculation of ancestral allel, calculation of sfs and drawing its bar plot. It is easy-to-use and runing fast. What y…☆11Dec 16, 2022Updated 3 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- NLR-Annotator upload☆77Jul 19, 2023Updated 3 years ago
- ☆17Oct 7, 2024Updated 2 years ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆52Sep 22, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated last month
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆62Dec 3, 2021Updated 4 years ago
- ☆12Jun 12, 2023Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆19May 16, 2025Updated last year
- The IntroBlocker ancestry inference algorithm☆18Oct 24, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆29Jul 16, 2022Updated 4 years ago
- MODAS: Multi-Omics Data Association Study toolkit☆21Nov 21, 2024Updated last year
- ☆11Feb 16, 2021Updated 5 years ago
- TQSLE v1.0 released☆10Aug 29, 2023Updated 3 years ago
- repository for code used in analysis of open wild wheat consortium☆20Nov 23, 2021Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions☆35Nov 14, 2024Updated last year
- Download NCBI assembly genomes with ftp. rsync, ascp☆12Aug 2, 2022Updated 4 years ago
- Polyploid-aware, multiscale super-pangenome graph strategy☆20Oct 29, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆15Nov 20, 2023Updated 2 years ago
- A tool for evaluating long-read de novo assembly results☆55Aug 25, 2024Updated 2 years ago
- DNA序列比对结果 可视化展示工具☆58Dec 18, 2022Updated 3 years ago
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 3 years ago
- ☆23Oct 30, 2022Updated 3 years ago
- A tool to infer species tree and phylogenetic network from multilocus data☆32Jul 2, 2020Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago