zhangtaolab / Plant_DNA_LLMsLinks
PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes
☆45Updated 6 months ago
Alternatives and similar repositories for Plant_DNA_LLMs
Users that are interested in Plant_DNA_LLMs are comparing it to the libraries listed below
Sorting:
- PlantCAD: cross-species modeling of plant genomes☆59Updated last month
- ☆83Updated last month
- ☆72Updated last month
- Associated code for EvoWeaver publication☆16Updated 7 months ago
- Species-aware DNA language models capture regulatory elements and their evolution☆27Updated 2 years ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆112Updated last week
- Fast and flexible ORF finder☆76Updated 3 years ago
- ☆75Updated last year
- Interactive tutorials for using scikit-bio in biological research☆57Updated 4 months ago
- Predicting gene expression levels from genomic sequences☆55Updated 5 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆71Updated 2 years ago
- A high-performance modification detection tool in Rust☆63Updated 2 months ago
- On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs☆24Updated last month
- Tool package to perform in-silico CRISPR analysis and assessment☆34Updated last month
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- A tool for scanning FASTA protein sequences against a library of Pfam HMMs☆22Updated 3 years ago
- Detecting Sequence Signals in Targeting Peptides Using Deep Learning☆13Updated 6 years ago
- A tool for visualising kmers in 2D space.☆12Updated 10 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Updated 2 years ago
- ☆26Updated 4 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- PrimerServer2: a high-throughput primer design and specificity-checking platform☆80Updated 3 years ago
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- ☆10Updated 2 years ago
- The tRNA adaptation index☆19Updated 8 months ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 6 months ago
- A collection of tools to download and process KEGG database☆40Updated 7 years ago
- Taxonomic classification of DNA sequences☆57Updated last year
- An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.☆95Updated 3 years ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated last year