hsinnan75 / GSAlignLinks
GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison
☆59Updated last year
Alternatives and similar repositories for GSAlign
Users that are interested in GSAlign are comparing it to the libraries listed below
Sorting:
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆67Updated last week
- SHOOT.bio - the phylogenetic search engine☆25Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆42Updated 2 weeks ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆52Updated 7 months ago
- orthology assignment using phylogenetic and network analyses☆45Updated 4 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆48Updated 2 weeks ago
- perSVade: personalized Structural Variation detection☆40Updated this week
- ☆35Updated last year
- Method for inferring path posterior probabilities and abundances from pangenome graph read alignments☆56Updated 6 months ago
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆60Updated 2 weeks ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 10 months ago
- Influenza genome analysis Nextflow workflow☆26Updated 3 months ago
- Complete assemblies of non-human primate genomes☆50Updated last month
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆37Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- Interactive phylogenetic tree viewer/editor☆47Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 months ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆35Updated 4 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week