SJTU-CGM / CDKAMLinks
☆10Updated 4 years ago
Alternatives and similar repositories for CDKAM
Users that are interested in CDKAM are comparing it to the libraries listed below
Sorting:
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Updated 3 years ago
- CoalHMM☆22Updated 11 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆35Updated 4 years ago
- A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences☆14Updated this week
- ☆28Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 8 months ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- ☆14Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- For bluntifying overlapped GFAs☆13Updated 11 months ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Close assembly gaps using long-reads at high accuracy.☆48Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- GBWT-based handle graph☆31Updated 3 months ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Updated 7 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆15Updated last year
- Toolkit for manipulating FASTA and SAM files☆18Updated last year
- Library for the Handle Graph abstraction☆23Updated 2 weeks ago
- C++ library for parsing several formats in bioinformatics☆9Updated 2 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Fast and accurate set similarity estimation via containment min hash☆42Updated 11 months ago