Alternatives and similar repositories for CDKAM

Users that are interested in CDKAM are comparing it to the libraries listed below

• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 months ago
• medvedevgroup / BubbZ
  ☆15Updated 5 years ago
• hzi-bifo / Haploflow
  ☆30Updated 2 years ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• simoncchu / GAPPadder
  GAPPadder is tool for closing gaps on draft genomes with short sequencing data
  ☆27Updated 8 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆38Updated last year
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 7 months ago
• VGP / vgp-tools
  ☆28Updated 7 months ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 weeks ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 4 months ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• mkirsche / Grafter
  Scaffolding with Ultralong Reads
  ☆15Updated 5 years ago
• fawaz-dabbaghieh / bubble_gun
  ☆40Updated 3 months ago
• marbl / MUMmer3
  MUMmer3
  ☆17Updated 3 years ago
• shahab-sarmashghi / Skmer
  Fast and accurate tool for estimating genomic distances between genome-skims
  ☆45Updated 2 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆40Updated last year
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆28Updated last year
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated last month
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated last year
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆23Updated last year
• at-cg / RAFT
  ☆28Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago