databio / bedshift

Related projects ⓘ

Alternatives and complementary repositories for bedshift

• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 5 years ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆22Updated 3 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• databio / pararead
  Simplifies parallel processing of DNA sequencing reads
  ☆9Updated last month
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆28Updated 3 months ago
• koesterlab / microphaser
  ☆12Updated last year
• databio / IGD
  A high-performance search engine for large-scale genomic interval datasets
  ☆17Updated 3 years ago
• genemine / iread
  iread
  ☆23Updated 3 years ago
• dongxuemin666 / RNA-combine
  RNA-seq data comprehensive data analysis toolbox
  ☆19Updated 2 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆20Updated 3 years ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆14Updated 7 months ago
• databio / GenomicDistributions
  Calculate and plot distributions of genomic ranges
  ☆25Updated 6 months ago
• Cibiv / trumicount
  Correctly counting molecules using unique molecular identifiers (UMIs)
  ☆9Updated 3 years ago
• caravagnalab / CNAqc
  CNAqc - Copy Number Alteration (CNA) Quality Check package
  ☆17Updated 3 weeks ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆30Updated 3 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆12Updated last month
• hasaru-k / GlimmaV2
  interactive plots for differential expression analysis
  ☆25Updated 2 months ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated 11 months ago
• beroukhim-lab / ascets
  This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…
  ☆14Updated 9 months ago
• Xinglab / rMATS-long
  ☆23Updated 2 months ago
• caleblareau / immune_cell_signature_genes
  Repository for signature genes from Immune Cell Atlas
  ☆18Updated 5 years ago
• casanova-lab / NHC
  NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
  ☆10Updated 9 months ago
• cboix / epimap_vis
  Code for EpiMap data browser
  ☆14Updated 5 months ago
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆14Updated 3 weeks ago
• rhshah / iAnnotateSV
  iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…
  ☆16Updated 2 months ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆11Updated this week
• zanglab / SICER2
  ☆20Updated 9 months ago
• koelling / amplimap
  amplicon/smMIP mapping and analysis pipeline
  ☆11Updated last year
• a2iEditing / deNovo-Detect
  ☆11Updated 2 years ago