Bedfile perturbation tool
☆17Mar 6, 2026Updated last month
Alternatives and similar repositories for bedshift
Users that are interested in bedshift are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Modular job submitter for arbitrary pipelines or commands.☆26Mar 26, 2026Updated 2 weeks ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated last month
- Manager for multi-container computing environments☆26Mar 6, 2026Updated last month
- ☆12Feb 19, 2021Updated 5 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Augmented interval list (AIList): a novel data structure for efficient genomic interval search☆23Aug 29, 2022Updated 3 years ago
- Serves a web interface and RESTful API for reference genome assets.☆12Feb 25, 2026Updated last month
- Calculate and plot distributions of genomic ranges☆27Apr 23, 2025Updated 11 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- Annotating epigenetic variation among samples with region sets in R☆11Jan 18, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- DTU analysis tool inspired by llamas☆12Sep 28, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- An interactive Shiny web application for genomic interval enrichment analysis using LOLA.☆16Apr 17, 2022Updated 3 years ago
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 4 years ago
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- R package for Methylation-based Inference of Regulatory Activity☆13Apr 9, 2020Updated 6 years ago
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 2 years ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Jun 21, 2024Updated last year
- Data visualization and Information Design with Python and R☆18Mar 31, 2023Updated 3 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆16Jan 15, 2025Updated last year
- Builds a PEP from SRA or GEO accessions☆55Mar 25, 2026Updated 2 weeks ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- Python toolkit for building restartable pipelines☆47Mar 6, 2026Updated last month
- ☆31Nov 25, 2019Updated 6 years ago
- ☆10Feb 25, 2024Updated 2 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- ☆27May 8, 2022Updated 3 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆37Jun 19, 2020Updated 5 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Repository☆10Oct 23, 2024Updated last year
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆19Apr 23, 2025Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model☆14Oct 19, 2023Updated 2 years ago
- The fastest VCF/BCF parser in R https://doi.org/10.1093/bioinformatics/btae049☆20Mar 31, 2026Updated last week
- Explore and analyze biological sequence data☆17Aug 1, 2024Updated last year
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago