databio / bedshift
Bedfile perturbation tool
☆17Updated last year
Alternatives and similar repositories for bedshift:
Users that are interested in bedshift are comparing it to the libraries listed below
- Two pass alignment for long reads☆21Updated 3 years ago
- A high-performance search engine for large-scale genomic interval datasets☆17Updated 3 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 4 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 9 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 2 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- Interactive eQTL visualizations☆13Updated 2 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- ☆20Updated this week
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- CLI to automate Nextflow pipeline testing☆12Updated 3 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 3 weeks ago
- iread☆23Updated 3 years ago
- interactive plots for differential expression analysis☆29Updated this week
- End-guided RNA assembler☆15Updated 3 months ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ☆27Updated 2 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- CADD-SV – a framework to score the effect of structural variants☆14Updated 3 weeks ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆28Updated 5 years ago