databio / bedshiftLinks
Bedfile perturbation tool
☆17Updated 3 months ago
Alternatives and similar repositories for bedshift
Users that are interested in bedshift are comparing it to the libraries listed below
Sorting:
- A high-performance search engine for large-scale genomic interval datasets☆19Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- CLI to automate Nextflow pipeline testing☆12Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- DTU analysis tool inspired by llamas☆12Updated 3 months ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 6 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated last week
- ☆12Updated last year
- End-guided RNA assembler☆15Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆27Updated 8 months ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 2 weeks ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- ☆21Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆14Updated 2 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Updated 2 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆30Updated 10 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 3 months ago