YuetongXU / CropGBMLinks
☆24Updated last month
Alternatives and similar repositories for CropGBM
Users that are interested in CropGBM are comparing it to the libraries listed below
Sorting:
- ☆24Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Updated last year
- A pipeline for isoseq☆23Updated 7 years ago
- tutorial on pggb☆35Updated 8 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 5 years ago
- ☆15Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆43Updated 2 months ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- iTAK☆43Updated last year
- Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.☆20Updated 3 years ago
- Repository for code used for publications☆28Updated 8 months ago
- Scripts for NGS processing☆17Updated 8 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 6 months ago
- trans-species prediction of TFBS in plants☆14Updated 4 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆16Updated 3 weeks ago
- ☆15Updated 5 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- Perform GWAS with gemma in a simple pipeline☆27Updated 5 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- BamDeal: a comprehensive toolkit for bam manipulation☆15Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆43Updated last year
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Updated 10 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 6 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago