Alternatives and similar repositories for CropGBM:

Users that are interested in CropGBM are comparing it to the libraries listed below

• cran / rrBLUP
   This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…
  ☆13Updated last year
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆35Updated 3 weeks ago
• Wendellab / CisTransRegulation
  Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum
  ☆16Updated last year
• hanlinqian / IntegrativeNetworkMap
  ☆23Updated 2 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆53Updated last week
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆38Updated 3 years ago
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆34Updated 3 months ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• kcakdemir / HiCPlotter
  “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
  ☆19Updated 4 years ago
• yiliao1022 / Pepper3Dgenome
  ☆15Updated 2 years ago
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year
• junjunlab / GetTransTool
  Extract longest transcript or longest CDS transcript from GTF annotation file or gencode transcripts fasta file.
  ☆20Updated 3 years ago
• IndigoFloyd / SoyDNGPNext
  A deeplearning driving bioinformatic toolkit.
  ☆16Updated 3 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• simon19891216 / GFAP
  a software for annotating plant genes
  ☆21Updated last year
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆24Updated 2 years ago
• xiekunwhy / bsa
  Bulked-Segregant Analysis using vcf file with or without parents
  ☆25Updated 4 months ago
• yangqimeng99 / svlearn
  A machine learning-based genotyping tool for structural variation in short reads
  ☆18Updated this week
• liulifenyf / TSPTFBS
  trans-species prediction of TFBS in plants
  ☆14Updated 3 years ago
• popgenome / lettuce2020
  Codes for the lettuce resequencing project in 2020
  ☆30Updated 3 years ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆19Updated last year
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• pinbo / SNP_Primer_Pipeline
  ☆21Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆43Updated last year
• baozg / Potato_C88
  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning
  ☆28Updated 8 months ago
• wjian8 / psvcp_v1.01
  Pan-genome Construction and Population Structure Variation Calling pipeline
  ☆38Updated 7 months ago
• caulilin / QTG_Seq
  ☆21Updated 6 years ago
• azodichr / GenomicPrediction_2018
  Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy
  ☆11Updated 7 years ago
• fanagislab / EndHiC
  EndHic is a fast and easy-to-use Hi-C scaffolding tool, using the Hi-C links from contig end regions instead of whole contig regions to a…
  ☆23Updated 2 years ago