Library of snakemake rules.
☆13Oct 2, 2018Updated 7 years ago
Alternatives and similar repositories for snakemake-rules
Users that are interested in snakemake-rules are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Feb 4, 2016Updated 10 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 20, 2026Updated 2 months ago
- ☆17Sep 24, 2013Updated 12 years ago
- A high-performance search engine for large-scale genomic interval datasets☆20Sep 1, 2021Updated 4 years ago
- Bedfile perturbation tool☆17Mar 6, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Apr 18, 2025Updated last year
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 4 years ago
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Mar 26, 2018Updated 8 years ago
- A Python implementation of edgeR for differential expression analysis☆105Mar 21, 2019Updated 7 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆18Dec 28, 2022Updated 3 years ago
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Jul 22, 2025Updated last year
- RNA-seq workflow for Snakemake based on STAR and featureCounts.☆24May 25, 2019Updated 7 years ago
- Generates synthetic cancer genomes with different contamination level and intra-tumor heterogeneity and devoid of any synthetic element☆11Sep 21, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies☆17Jan 23, 2023Updated 3 years ago
- Statistical Computing☆11Jan 24, 2025Updated last year
- Ontology Based Profile Matching☆17May 20, 2022Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Jun 13, 2023Updated 3 years ago
- Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering☆12May 4, 2019Updated 7 years ago
- Mapping of GENCODE gene annotation set files to older assembies☆14Apr 16, 2026Updated 3 months ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆151Feb 17, 2026Updated 5 months ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python library to identify Identical By State regions☆24Mar 19, 2023Updated 3 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- ☆16Mar 16, 2017Updated 9 years ago
- Spatiotemporal Clustering and Inference of Omics Networks (SC-ION)☆12Oct 24, 2024Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 7 years ago
- my code from working through Zed Shaw's book☆14May 5, 2016Updated 10 years ago
- Material for Introdoctory R course website☆18Feb 15, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Jun 16, 2026Updated last month
- Deep learning-based prediction of regulatory genome sequences☆12Apr 20, 2020Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…☆13Jul 6, 2022Updated 4 years ago
- Filters for false-positive mutation calls in NGS☆34Apr 12, 2019Updated 7 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago