Alternatives and similar repositories for DeepGS

Users that are interested in DeepGS are comparing it to the libraries listed below

• YuetongXU / CropGBM
  ☆24Updated 11 months ago
• lauzingaretti / DeepGP
  A tool to implement Genomic Prediction Experiments using Deep Learning
  ☆17Updated 2 years ago
• cran / rrBLUP
   This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…
  ☆13Updated last year
• Gregor-Mendel-Institute / MultLocMixMod
  An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations
  ☆12Updated 7 years ago
• JaeYoonKim72 / GMStool
  ☆16Updated 4 years ago
• YinLiLin / KAML
  Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
  ☆42Updated last month
• Menggg / BLINK
  BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions
  ☆36Updated last month
• amkusmec / FarmCPUpp
  Perform GWAS using the FarmCPU model.
  ☆23Updated 5 months ago
• yairf / SDS
  R code to compute the Singleton Density Score (SDS)
  ☆30Updated 8 years ago
• YaoLab-Bioinfo / shinyCircos-V2.0
  an R/Shiny application for interactive creation of Circos plot
  ☆48Updated 2 years ago
• pangenome / pggb-workshop
  tutorial on pggb
  ☆34Updated 4 months ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆30Updated 2 months ago
• YuanmingZhang65 / IIIVmrMLM
  The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…
  ☆32Updated 2 months ago
• tobiasrausch / vc
  A tutorial on structural variant calling for short read sequencing data
  ☆35Updated 6 months ago
• petitmingchang / TO-GCN
  Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…
  ☆48Updated last year
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆50Updated 7 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆49Updated 8 months ago
• skinnerlab / MeDIP-seq
  A set of scripts and functions for analyzing MeDIP-seq datasets
  ☆15Updated 4 years ago
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 2 months ago
• YaoLab-Bioinfo / ECOGEMS
  Efficient compression and retrieve of genotype data with integer sparse matrices
  ☆16Updated last month
• Oshlack / Lace
  Building SuperTranscripts: A linear representation of transcriptome data
  ☆67Updated 4 years ago
• ngarud / SelectionHapStats
  SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…
  ☆26Updated 6 years ago
• auton1 / LDhat
  Estimate recombination rates from population genetic data
  ☆66Updated 4 years ago
• CshlSiepelLab / phast
  PHAST
  ☆73Updated this week
• pievos101 / PopGenome
  An Efficient Swiss Army Knife for Population Genomic Analyses in R
  ☆36Updated 11 months ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆83Updated 2 years ago
• akcorut / kGWASflow
  kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
  ☆39Updated last year
• Nextomics / pipeline-for-isoseq
  A pipeline for isoseq
  ☆23Updated 6 years ago