cma2015 / DeepGS
DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.
☆50Updated 3 years ago
Alternatives and similar repositories for DeepGS:
Users that are interested in DeepGS are comparing it to the libraries listed below
- ☆24Updated 7 months ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆41Updated last month
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆55Updated 2 months ago
- Perform GWAS using the FarmCPU model.☆23Updated last month
- ☆16Updated 4 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆62Updated 3 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆34Updated last month
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆19Updated 7 years ago
- tutorial on pggb☆28Updated last week
- a gatk4 pipeline with NA12878 demo dateset ,conda environment used(no GPU)☆11Updated 5 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆33Updated 3 years ago
- Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) da…☆45Updated last year
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆22Updated last month
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆13Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…☆20Updated 7 years ago
- Ultraperformant reimplementation of SICER☆57Updated 3 years ago
- R package for genomic feature analysis and visualization☆75Updated 4 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆81Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 4 years ago
- PHAST☆71Updated last month
- Coding-Non-Coding Index (CNCI)☆38Updated 6 years ago
- ☆33Updated last month
- ☆51Updated 5 years ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year