Alternatives and similar repositories for GENESIS:

Users that are interested in GENESIS are comparing it to the libraries listed below

• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• CNSGenomics / impute-pipe
  Canonical SGE cluster genotype imputation pipeline
  ☆12Updated 9 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆34Updated 2 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆46Updated last month
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆22Updated 4 months ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 6 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆19Updated 5 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆32Updated 5 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆38Updated last year
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆45Updated 3 weeks ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆50Updated 6 years ago
• brielin / Popcorn
  Software for estimating correlation of trait effect sizes across populations
  ☆44Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• ajaynadig / bhr
  Suite of heritability and genetic correlation estimation tools for exome-sequencing data
  ☆33Updated 3 weeks ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆51Updated last year
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆40Updated 2 weeks ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• statgen / swiss
  Software to help identify overlap between association scan results and GWAS hit catalogs.
  ☆15Updated 2 years ago
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago