Alternatives and similar repositories for GENESIS

Users that are interested in GENESIS are comparing it to the libraries listed below

• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆35Updated 2 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• joepickrell / fgwas
  Functional genomics and genome-wide association studies
  ☆67Updated 6 years ago
• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆23Updated 8 months ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆42Updated last year
• zhouhufeng / FAVORannotator
  ☆20Updated 2 years ago
• gagneurlab / OUTRIDER
  OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
  ☆53Updated this week
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆52Updated 6 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆77Updated this week
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆59Updated 5 years ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆69Updated 3 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 3 months ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆32Updated last month
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆45Updated 2 years ago
• fhormoz / caviar
  ☆60Updated 3 years ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 5 months ago
• MRCIEU / gwas2vcf
  Convert GWAS summary statistics to VCF
  ☆48Updated 2 years ago
• Atkinson-Lab / Tractor
  Scripts for implementing the Tractor pipeline
  ☆50Updated 4 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆50Updated 5 months ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 7 months ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆89Updated last month
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• atgu / hgdp_tgp
  ☆42Updated last week
• CshlSiepelLab / LINSIGHT
  ☆26Updated last month
• xqwen / torus
  QTL Discovery using Annotations
  ☆25Updated 2 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆40Updated 7 months ago