Alternatives and similar repositories for H-MAGMA:

Users that are interested in H-MAGMA are comparing it to the libraries listed below

• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• cuelee / pleio
  ☆19Updated last year
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆51Updated 4 months ago
• bogdanlab / focus
  FOCUS: Fine-mapping Of CaUsal gene Sets
  ☆44Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• yanglab-emory / TIGAR
  ☆21Updated 2 weeks ago
• clagiamba / moloc
  ☆34Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 11 months ago
• xqwen / dap
  software package for integrative genetic association analysis
  ☆34Updated last year
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆32Updated last month
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• hakyimlab / gtex-gwas-analysis
  ☆22Updated 3 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• eQTL-Catalogue / eQTL-Catalogue-resources
  ☆46Updated 5 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• jrs95 / gassocplot
  Regional association plots
  ☆26Updated last year
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆31Updated last year
• siddhartha-kar / clonal-hematopoiesis
  This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes…
  ☆12Updated 2 years ago
• xtonyjiang / GNOVA
  A principled framework to estimate annotation-stratified genetic covariance using GWAS summary statistics.
  ☆28Updated 10 months ago
• Stahl-Lab-MSSM / coloc2
  Upgrade to coloc
  ☆13Updated 6 years ago
• opentargets / genetics-sumstat-harmoniser
  Harmonise GWAS summary statistics against a reference VCF
  ☆41Updated 3 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• xqwen / torus
  QTL Discovery using Annotations
  ☆24Updated 2 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated last year
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆26Updated 5 years ago
• carlaml / LDpred-funct
  Here we develop the software for the method LDpredfunct described in https://www.biorxiv.org/content/early/2018/07/24/375337
  ☆17Updated 7 months ago
• RajLabMSSM / echolocatoR
  Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
  ☆37Updated 2 years ago