Alternatives and similar repositories for Tractor-tutorial

Users that are interested in Tractor-tutorial are comparing it to the libraries listed below

• YinLiLin / hibayes
  Individual-Level, Summary-Level and Single-Step Bayesian Regression Models for Genomic Prediction and Genome-Wide Association Studies
  ☆52Updated 2 weeks ago
• Atkinson-Lab / Tractor
  Scripts for implementing the Tractor pipeline
  ☆51Updated 2 weeks ago
• rcc-uchicago / genetic-data-analysis-2
  RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations."
  ☆24Updated 2 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated 3 weeks ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆88Updated 3 years ago
• totajuliusd / topr
  topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…
  ☆68Updated 11 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆89Updated 2 years ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆52Updated last month
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 4 years ago
• KosukeHamazaki / RAINBOWR
  Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)
  ☆24Updated last week
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆49Updated 6 months ago
• PMBio / peer
  A factor analysis package
  ☆101Updated 13 years ago
• weizhouUMICH / SAIGE
  ☆194Updated 3 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• YinLiLin / KAML
  Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction
  ☆45Updated 5 months ago
• xihaoli / STAAR
  An R package for performing STAAR procedure in whole-genome sequencing studies
  ☆95Updated 7 months ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆49Updated 5 months ago
• quinlan-lab / sllobs-biostats
  ☆72Updated 3 years ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆131Updated 3 weeks ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆82Updated this week
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆51Updated this week
• variani / finemapr
  Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
  ☆33Updated 3 months ago
• kaustubhad / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 9 months ago
• fhormoz / caviar
  ☆62Updated 3 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆40Updated last year
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago