broadinstitute / gnomad_qcLinks
☆68Updated this week
Alternatives and similar repositories for gnomad_qc
Users that are interested in gnomad_qc are comparing it to the libraries listed below
Sorting:
- Burden testing against public controls☆50Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆87Updated last week
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆26Updated 2 months ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆72Updated 5 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆66Updated 5 months ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- ☆71Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- ☆40Updated 7 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- A complete tool set for molecular QTL discovery and analysis☆56Updated last year
- QDNAseq package for Bioconductor☆50Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆85Updated 2 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆24Updated 2 months ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆55Updated 4 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆74Updated 11 months ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Tumor Mutational Burden☆61Updated last month
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- ☆69Updated 3 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- ☆21Updated last week