Alternatives and similar repositories for MetaSTAAR

Users that are interested in MetaSTAAR are comparing it to the libraries listed below

• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆37Updated 9 months ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆32Updated 9 months ago
• fhormoz / caviar
  ☆62Updated 3 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated last month
• jianyangqt / osca
  ☆20Updated 2 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 7 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆12Updated 8 years ago
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆41Updated last year
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆68Updated 2 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆18Updated 3 weeks ago
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆49Updated 6 months ago
• WansonChoi / CookHLA
  An accurate and efficient HLA imputation method.
  ☆26Updated 2 years ago
• cgrace1978 / manhplot
  Manhattan++
  ☆28Updated last year
• jinghuazhao / FM-pipeline
  A Fine-Mapping pipeline
  ☆21Updated 6 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆41Updated 9 months ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆54Updated 3 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 3 years ago
• LappalainenLab / lorals_paper_code
  ☆27Updated 3 years ago
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 9 months ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆32Updated 2 years ago
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• markowetzlab / Drews2022_CIN_Compendium
  Main repository for Drews et al. (Nature, 2022)
  ☆42Updated 2 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• Cloufield / CTGCatalog
  A collection of commonly used resources for complex trait genetics.
  ☆33Updated this week
• jxzb1988 / MMQTL
  MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control f…
  ☆11Updated 5 months ago