Alternatives and similar repositories for analysis_pipeline:

Users that are interested in analysis_pipeline are comparing it to the libraries listed below

• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 5 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆33Updated 6 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆33Updated last year
• IARCbioinfo / gatk4-GenotypeGVCFs-nf
  Joint calling of gVCF, following GATK4 Best Practices
  ☆12Updated 5 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆49Updated 5 years ago
• freeseek / gwaspipeline
  ☆40Updated 6 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆32Updated 3 years ago
• arq5x / bedtools-protocols
  ☆78Updated 10 years ago
• ilarsf / gwasTools
  Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
  ☆30Updated 11 months ago
• sirselim / illumina450k_filtering
  A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
  ☆30Updated last year
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆71Updated 3 years ago
• pcgoddard / Burchardlab_Tutorials
  ☆30Updated 3 years ago
• atgu / hgdp_tgp
  ☆36Updated 3 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆43Updated this week
• gabraham / plink2R
  Read PLINK BED/BIM/FAM files into R
  ☆40Updated 3 years ago
• KHP-Informatics / illumina-array-protocols
  processing illumina SNP arrays
  ☆19Updated 7 years ago
• slowkow / proxysnps
  Get SNP proxies from the 1000 Genomes Project.
  ☆28Updated 6 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 3 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆41Updated last month
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆39Updated 7 years ago
• genepi-freiburg / gwas
  Scripts for GWAS association and metaanalysis
  ☆43Updated 4 years ago
• carjed / helmsman
  highly-efficient & lightweight mutation signature matrix aggregation
  ☆19Updated 3 years ago
• fhormoz / caviar
  ☆55Updated 3 years ago
• gatk-workflows / seq-format-conversion
  Workflows for converting between sequence data formats
  ☆37Updated 3 years ago
• mskcc / mutation-signatures
  Create mutation signatures from MAF's, and decompose them into Stratton signatures
  ☆60Updated 5 years ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 5 years ago
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• CshlSiepelLab / LINSIGHT
  ☆24Updated 7 months ago
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated 3 months ago