UW-GAC / analysis_pipeline
TOPMed analysis pipeline
☆52Updated last year
Alternatives and similar repositories for analysis_pipeline:
Users that are interested in analysis_pipeline are comparing it to the libraries listed below
- Report reverse and ambiguous strand SNPs in GWAS data☆32Updated 5 years ago
- processing illumina SNP arrays☆19Updated 8 years ago
- Burden testing against public controls☆50Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 7 years ago
- ☆57Updated 3 years ago
- ☆30Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Updated 5 years ago
- ☆40Updated 7 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- An automated RNA-seq pipeline using Nextflow☆37Updated 6 months ago
- ☆24Updated 4 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆37Updated last month
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated last week
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- ☆40Updated 6 months ago
- Read PLINK BED/BIM/FAM files into R☆40Updated 3 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Fork of ricopili for development of pipeline for family-based data☆17Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Convert GWAS summary statistics to VCF☆48Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- ☆25Updated 10 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago