TOPMed analysis pipeline
☆52Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for analysis_pipeline
Users that are interested in analysis_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆44Mar 4, 2026Updated 4 months ago
- ☆12Jun 16, 2023Updated 3 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 4 months ago
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 3 months ago
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆25May 9, 2026Updated 2 months ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 5 years ago
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 8 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆67Oct 22, 2025Updated 9 months ago
- ☆70Updated this week
- Partners Biobank genomics data QC☆30Mar 31, 2020Updated 6 years ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 4 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆48Updated this week
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆82Nov 30, 2018Updated 7 years ago
- An analytical approach for GWAS-by-Subtraction☆15May 27, 2025Updated last year
- ☆25Feb 25, 2026Updated 5 months ago
- ggplot2-based Manhattan plot☆13Oct 18, 2022Updated 3 years ago
- GWAS SNP Regulatory Analysis Tool☆17Mar 19, 2015Updated 11 years ago
- ☆17Sep 14, 2023Updated 2 years ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Jan 24, 2020Updated 6 years ago
- Statistical fine-mapping pipeline in FinnGen☆34Jul 9, 2026Updated 2 weeks ago
- ☆11Jun 26, 2020Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆78May 29, 2026Updated last month
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 3 months ago
- genetic correlation between phenotypes in the UK biobank☆15Feb 22, 2024Updated 2 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- ☆12Apr 25, 2026Updated 3 months ago
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago