UW-GAC / analysis_pipeline
TOPMed analysis pipeline
☆52Updated last year
Related projects ⓘ
Alternatives and complementary repositories for analysis_pipeline
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆11Updated 5 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- ☆24Updated 5 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- An awk-like VCF parser☆54Updated 10 months ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆24Updated last month
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- ☆78Updated 10 years ago
- Burden testing against public controls☆50Updated 8 months ago
- Multi-sample somatic variant caller☆49Updated 2 years ago
- Get SNP proxies from the 1000 Genomes Project.☆28Updated 6 years ago
- Repository for resources we'd like to share with the community.☆24Updated 2 years ago
- Convert GWAS summary statistics to VCF☆47Updated last year
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆50Updated 4 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆39Updated 3 years ago
- R package for inferring copy number from read depth☆31Updated 2 years ago
- ☆40Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- Sequence kernel association test (SKAT)☆42Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Genomic Association Tester☆29Updated last year
- ☆23Updated 3 weeks ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆48Updated 5 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆49Updated 11 months ago