UW-GAC / analysis_pipelineLinks
TOPMed analysis pipeline
☆52Updated 2 years ago
Alternatives and similar repositories for analysis_pipeline
Users that are interested in analysis_pipeline are comparing it to the libraries listed below
Sorting:
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- ☆40Updated 7 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Analysis pipeline for cancer sequencing data☆112Updated 7 months ago
- An automated RNA-seq pipeline using Nextflow☆37Updated last year
- ☆78Updated 11 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆50Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- An awk-like VCF parser☆56Updated last year
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Read PLINK BED/BIM/FAM files into R☆41Updated 4 years ago
- Scripts for GWAS association and metaanalysis☆43Updated 5 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆33Updated 8 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 5 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- Repository for resources we'd like to share with the community.☆25Updated 3 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 7 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month