UW-GAC / analysis_pipeline
TOPMed analysis pipeline
☆52Updated last year
Alternatives and similar repositories for analysis_pipeline:
Users that are interested in analysis_pipeline are comparing it to the libraries listed below
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 5 years ago
- Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)☆30Updated last year
- ☆40Updated 7 years ago
- processing illumina SNP arrays☆19Updated 8 years ago
- ☆58Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Updated 6 years ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆38Updated 3 months ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- ☆41Updated 7 months ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- ☆30Updated 3 years ago
- Burden testing against public controls☆50Updated last year
- Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue☆47Updated 3 weeks ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆53Updated last year
- Enhanced version of the FastQTL QTL mapper☆65Updated 2 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- Identifying recurrent mutations in cancer☆37Updated 4 years ago
- Repository for resources we'd like to share with the community.☆24Updated 3 years ago
- Generalized linear Mixed Model Association Tests☆42Updated last year
- ☆78Updated 11 years ago
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- Canonical SGE cluster genotype imputation pipeline☆12Updated 9 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 3 years ago