TOPMed analysis pipeline
☆52Oct 10, 2023Updated 2 years ago
Alternatives and similar repositories for analysis_pipeline
Users that are interested in analysis_pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆44Mar 4, 2026Updated 3 months ago
- ☆12Jun 16, 2023Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Mar 2, 2026Updated 3 months ago
- Fast manhattenplots using ggplot2☆13Apr 24, 2026Updated last month
- ☆24May 9, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- PhenomeXcan: mapping the genome to the phenome through the transcriptome☆11Jun 28, 2020Updated 5 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- Automated ACMG/AMP classification for human variants associated with congenital hearing loss☆11May 14, 2025Updated last year
- As part of the COVID-19 Host Genetics Global initative, this repo serves to corroborate sample scripts for sequencing QC.☆12Jul 30, 2020Updated 5 years ago
- Deprecated, see https://labsyspharm.github.io/rnaseq/☆12Feb 28, 2019Updated 7 years ago
- Finding cryptic relationships to boost disease gene detection☆12May 31, 2023Updated 3 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆18Mar 20, 2023Updated 3 years ago
- Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…☆22Sep 24, 2018Updated 7 years ago
- Code supporting analyses in paper on fine-mapping AD loci☆16Jun 28, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Codebook from my GWAS cookbook☆196May 26, 2022Updated 4 years ago
- Statistical fine-mapping pipeline in FinnGen☆34May 13, 2026Updated last month
- reference implementation of GA4GH WGS Quality Control Standards☆11Nov 25, 2025Updated 6 months ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- ☆70Updated this week
- Partners Biobank genomics data QC☆30Mar 31, 2020Updated 6 years ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆66Oct 22, 2025Updated 7 months ago
- The main website for the OpenMendel project.☆13Jul 24, 2022Updated 3 years ago
- ☆82Nov 30, 2018Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- ☆17Sep 14, 2023Updated 2 years ago
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46May 31, 2026Updated 2 weeks ago
- Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline☆57Jan 24, 2020Updated 6 years ago
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆75May 29, 2026Updated 2 weeks ago
- genetic correlation between phenotypes in the UK biobank☆14Feb 22, 2024Updated 2 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- GWAS QC, PCA, haplotype phasing, genotype imputation☆20Mar 31, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarking gene and variant prioritization algorithms for GWAS data☆15Feb 27, 2020Updated 6 years ago
- ☆11Apr 25, 2026Updated last month
- RSS-NET: Regression with Summary Statistics exploiting Network Topology☆20Apr 23, 2025Updated last year
- The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…☆37Dec 3, 2024Updated last year
- Selecting features as (network) nodes☆11May 27, 2018Updated 8 years ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- Comprehensive collection of Claude Code skills for academic research in economics, finance, and social sciences☆167Apr 26, 2026Updated last month