Alternatives and similar repositories for GenomeClinic-PGX

Users that are interested in GenomeClinic-PGX are comparing it to the libraries listed below

• marcos-diazg / musica
  MuSiCa - Mutational Signatures in Cancer
  ☆23Updated last year
• maximilianh / pubMunch
  various tools to download, convert and process the full text of scientific articles
  ☆64Updated 2 years ago
• genialis / resolwe-bio
  Bioinformatics pipelines for Resolwe
  ☆18Updated this week
• PreMedKB / PAnno
  PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.
  ☆15Updated 2 years ago
• sanderslab / WGS-pipeline
  WGS Pipeline
  ☆13Updated 7 years ago
• DKFZ-ODCF / DKFZBiasFilter
  ☆12Updated 3 years ago
• WGLab / EHR-Phenolyzer
  A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list
  ☆37Updated 2 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• solvebio / veppy
  Variant Effect Prediction for Python
  ☆15Updated 8 years ago
• RausellLab / CNVxplorer
  A webtool for the clinical interpretation of CNVs in rare disease patients
  ☆12Updated 3 years ago
• seandavi / ci4cc-informatics-resources
  Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are d…
  ☆22Updated 7 years ago
• ImperialCardioGenetics / frequencyFilter
  Allele frequency filtering for Mendelian variant discovery
  ☆18Updated 9 years ago
• biocompute-objects / BCO_Documentation
  Repository for documentation to support the IEEE 2791-2020 standard. Please see our home page for communications/publications:
  ☆17Updated last year
• phenopolis / phenopolis
  An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data
  ☆33Updated 3 years ago
• smithlabcode / walt
  WALT is a read mapping program for bisulfite sequencing DNA methylation studies.
  ☆17Updated 3 years ago
• quinlan-lab / vcftidy
  normalize, left-align, trim, validate and clean VCF files
  ☆20Updated 10 years ago
• dnil / rhocall
  Call regions of homozygosity and make tentative UPD calls
  ☆12Updated 4 months ago
• PharmGKB / pgkb-ngs-pipeline
  PharmGKB NGS Pipeline
  ☆19Updated 7 years ago
• ga4gh / htsget
  Python client for GA4GH htsget protocol
  ☆15Updated 2 years ago
• refresh-bio / GTC
  GenoTypes Compressor
  ☆16Updated 3 years ago
• AshleyLab / stmp
  Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomi…
  ☆12Updated 9 years ago
• PanosFirmpas / bamToBigWig
  Directly create a bigwig file with signal derived from a sorted and indexed bam file.
  ☆11Updated 8 years ago
• raulossio / VCF-plotein
  Visualisation and prioritisation of genomic variants from human exome sequencing projects
  ☆13Updated 6 years ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆19Updated last year
• Genomon-Project / paplot
  paplot creates various dynamic and interactive reports for cancer genome analysis.
  ☆25Updated 2 years ago
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 7 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 10 months ago
• PapenfussLab / PathOS
  PathOS is a clinical application for filtering, analysing and reporting on NGS variants
  ☆29Updated 4 years ago
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 10 years ago
• Illumina / happyR
  R tools to interact with hap.py output
  ☆16Updated 6 years ago