griffithlab / VAtoolsLinks
A set of tools to annotate VCF files with expression and readcount data
☆29Updated 3 months ago
Alternatives and similar repositories for VAtools
Users that are interested in VAtools are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 10 months ago
- Workflow for Sequenza, cellularity and ploidy☆18Updated last week
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated 8 months ago
- ☆23Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- CADD-SV – a framework to score the effect of structural variants☆14Updated 2 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- ☆22Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated last month
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last week
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆19Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- a set of NGS pipelines☆24Updated last week
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 weeks ago
- ☆24Updated 9 months ago
- ☆13Updated 7 years ago
- This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions …☆17Updated 2 years ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 2 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆17Updated 3 weeks ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆15Updated last year