HaoKeLab / ensembleCNVLinks
☆19Updated 3 years ago
Alternatives and similar repositories for ensembleCNV
Users that are interested in ensembleCNV are comparing it to the libraries listed below
Sorting:
- Integrated copy number variation detection toolset☆26Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- ☆25Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆30Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- A webtool for the clinical interpretation of CNVs in rare disease patients☆12Updated 3 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 9 months ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 5 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 4 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests☆49Updated 11 months ago
- Library for indexing VCF files for random access searches by rsID☆17Updated last year
- ☆36Updated 5 years ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Updated 8 months ago