Gene Environment Interaction Estimator
☆12Dec 11, 2025Updated 2 months ago
Alternatives and similar repositories for GENIE
Users that are interested in GENIE are comparing it to the libraries listed below
Sorting:
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Jan 30, 2025Updated last year
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 8 months ago
- ☆13Feb 2, 2023Updated 3 years ago
- Code for AISTATS 2017 paper on "Conjugate-Computation Variational Inference"☆20Jul 10, 2020Updated 5 years ago
- ☆20Jul 28, 2025Updated 7 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- ☆14Aug 9, 2017Updated 8 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Aug 10, 2021Updated 4 years ago
- Scalable Ultra-Sparse Bayesian PCA☆32Feb 13, 2024Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆27Nov 4, 2025Updated 3 months ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated last year
- ☆35Dec 19, 2023Updated 2 years ago
- ☆35Jun 15, 2023Updated 2 years ago
- Genetic Association Analysis Under Complex Survey Sampling☆13Nov 13, 2019Updated 6 years ago
- ☆10Jul 8, 2020Updated 5 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆44Sep 25, 2025Updated 5 months ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆37Oct 20, 2025Updated 4 months ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated 10 months ago
- ☆14Dec 15, 2019Updated 6 years ago
- Workshop materials for R Programming for HPC☆10Oct 9, 2025Updated 4 months ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- Fast inference for Generalised Linear Mixed Models.☆13Jan 17, 2025Updated last year
- ☆12Sep 14, 2025Updated 5 months ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago
- ☆14Mar 28, 2025Updated 11 months ago
- Julia module to handle PLINK BED files☆11Jul 10, 2018Updated 7 years ago
- Spark and NumPy implementations of Newton Sketch.☆11Jul 24, 2018Updated 7 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 4 years ago
- Workflow for performing cistrome-wide associations studies☆11Jul 25, 2022Updated 3 years ago
- hJAM is a hierarchical model which unifies the framework of Mendelian Randomization and Transcriptome-wide association studies.☆10Jan 19, 2024Updated 2 years ago
- SParse lINear solvers in JAX☆28Feb 22, 2026Updated last week
- ☆15Feb 20, 2025Updated last year
- Zotero integration for Obsidian in Neovim☆18Aug 21, 2025Updated 6 months ago
- An automated pipeline for processing DamID sequencing datasets☆16Aug 28, 2025Updated 6 months ago