Gene Environment Interaction Estimator
☆12Dec 11, 2025Updated 4 months ago
Alternatives and similar repositories for GENIE
Users that are interested in GENIE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Dec 7, 2022Updated 3 years ago
- ☆20Jul 28, 2025Updated 9 months ago
- Toy simulations and analyses of heritability and genetic differences☆11Jul 17, 2024Updated last year
- Software to infer latent pleiotropic components from GWAS summary data☆16Jan 30, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- LEMMA (Linear Environment Mixed Model Analysis) aims to uncover GxE interactions between SNPs and a linear combination of multiple enviro…☆13Apr 22, 2023Updated 3 years ago
- ☆13Feb 2, 2023Updated 3 years ago
- Code for AISTATS 2017 paper on "Conjugate-Computation Variational Inference"☆20Jul 10, 2020Updated 5 years ago
- Drug Target Interaction Prediction Using Protein Binding Sites And Drug Fragments☆13Aug 11, 2025Updated 8 months ago
- ☆14Aug 9, 2017Updated 8 years ago
- Tool for predicting TWAS features (e.g. gene expression) in a target sample☆16Jun 24, 2025Updated 10 months ago
- metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…☆21May 27, 2021Updated 4 years ago
- Zotero integration for Obsidian in Neovim☆18Aug 21, 2025Updated 8 months ago
- ☆26Oct 8, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Official repo for the paper "Bilinear MLPs enable weight-based mechanistic interpretability".☆31Apr 13, 2026Updated 3 weeks ago
- Mixed models @lme4 + custom covariances + parameter constraints☆53Jan 7, 2021Updated 5 years ago
- Leveraging functional information to improve GWAS summary statistic imputation☆20Aug 10, 2021Updated 4 years ago
- Download binary executables and sample data here:☆18Oct 28, 2016Updated 9 years ago
- Scalable Ultra-Sparse Bayesian PCA☆33Feb 13, 2024Updated 2 years ago
- This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…☆15Aug 8, 2024Updated last year
- ☆36Dec 19, 2023Updated 2 years ago
- Mediated Expression Score Regression (MESC)☆28Nov 4, 2025Updated 6 months ago
- Workshop materials for R Programming for HPC☆10Mar 7, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking computational doublet-detection methods for single-cell RNA sequencing data☆10Feb 25, 2021Updated 5 years ago
- MA-FOCUS: Multi-Ancestry Fine-mapping Of CaUsal gene Sets☆39Apr 26, 2024Updated 2 years ago
- The R/Python scripts for the analysis of single-cell RNA-seq data from COVID-19 patients☆10Dec 16, 2020Updated 5 years ago
- BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data☆14Apr 29, 2025Updated last year
- Rmarkdown / compiled html files for human reprogramming dataset analysis☆18Jun 11, 2020Updated 5 years ago
- ☆17Feb 20, 2025Updated last year
- ☆37Jun 15, 2023Updated 2 years ago
- Chromatin segmentation in R☆19Feb 4, 2018Updated 8 years ago
- Test genes for Spatial Variation☆15Dec 20, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Python wrapper for MaxEntScan to calculate splice site strength.☆18Jul 8, 2022Updated 3 years ago
- An R package for creating 3D barplots☆12Jan 8, 2023Updated 3 years ago
- ☆13Dec 14, 2023Updated 2 years ago
- Single cell Type Enrichment Analysis for Phenotypes (STEAP)☆14Jun 16, 2021Updated 4 years ago
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…☆44Mar 4, 2026Updated 2 months ago
- Zhou & Stephens (2014) GEMMA multivariate linear mixed model☆13Oct 24, 2020Updated 5 years ago
- Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits☆11Jun 2, 2021Updated 4 years ago