Alternatives and similar repositories for GENESIS:

Users that are interested in GENESIS are comparing it to the libraries listed below

• RayDebashree / metaUSAT
  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using u…
  ☆19Updated 3 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆19Updated 2 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• immunogenomics / cov-ldsc
  ☆11Updated 2 years ago
• Jmtorres138 / TACTICAL
  Tissue of ACTion scores for Investigating Complex trait-Associated Loci
  ☆13Updated 3 years ago
• wouterpeyrot / CCGWAS
  ☆19Updated 2 years ago
• lsncibb / SummaryAUC
  Calculate AUC based on GWAS summary statistics only
  ☆10Updated 6 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆12Updated last year
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 3 months ago
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆30Updated last year
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated last month
• explodecomputer / tryx
  ☆10Updated 4 years ago
• JonJala / mama
  ☆17Updated 7 months ago
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• FINNGEN / CS-PRS-pipeline
  PRS pipeline using PRS_CS
  ☆13Updated last month
• omerwe / S-PCGC
  Heritability, genetic correlation and functional enrichment estimation for case-control studies
  ☆19Updated last year
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 10 months ago
• qlu-lab / PUMAS
  Fine-tuning polygenic risk score models using GWAS summary statistics
  ☆48Updated 2 weeks ago
• explodecomputer / random-metal
  Adding random effects model to the METAL software
  ☆13Updated last year
• mkanai / ldsc-corrplot-rg
  corrplot of LDSC genetic correlation results
  ☆50Updated 3 years ago
• YinLiLin / SumTool
  Tool for GWAS summary-level data analysis
  ☆26Updated 4 years ago
• mikelove / mrlocus
  Older repo for MRLocus. See new website for software usage guide:
  ☆15Updated last year
• GRealesM / RapidoPGS
  A rapido and lightweight method for PGS computation
  ☆13Updated last month
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆27Updated 5 months ago
• yuanzhongshang / MRAID
  ☆16Updated 2 years ago
• LizaDarrous / lhcMR
  lhcMR
  ☆24Updated 11 months ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆21Updated 7 years ago