Alternatives and similar repositories for admix-kit

Users that are interested in admix-kit are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• atgu / GWASpy
  GWAS QC, PCA, haplotype phasing, genotype imputation
  ☆20Updated 4 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆41Updated last year
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• psoerensen / qgg
  Statistical tools for Quantitative Genetic Analyses
  ☆38Updated 2 weeks ago
• Cloufield / CTGCatalog
  A collection of commonly used resources for complex trait genetics.
  ☆35Updated last month
• RitchieLab / GWAS-QC
  Quality control steps for GWAS
  ☆25Updated 2 years ago
• zhilizheng / qsubshcom
  qsub command for serveral cluster engine
  ☆14Updated 11 months ago
• shuliliu / cattleGTEx
  The cattle Genotype-Tissue Expression atlas v1
  ☆28Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 4 months ago
• swvanderlaan / MetaGWASToolKit
  A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies
  ☆16Updated last month
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• jianyangqt / osca
  ☆20Updated 2 years ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆41Updated 2 years ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆33Updated last year
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆68Updated 8 months ago
• myles-lewis / locuszoomr
  A pure R implementation of locuszoom for plotting genetic data at genomic loci accompanied by gene annotations.
  ☆52Updated 9 months ago
• FarmGTEx / PigGTEx-Pipeline-v0
  ☆34Updated 4 months ago
• dougspeed / LDAK
  ☆36Updated 3 weeks ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆56Updated 2 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆84Updated last month
• mccoy-lab / MAGE
  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…
  ☆42Updated last year
• wuyangf7 / OPERA
  This software tool implements the OPERA (omics pleiotropic association) method to test for combinatorial pleiotropic associations of mole…
  ☆36Updated last year
• AAlhendi1707 / GWAS
  Genome-wide Association Study (GWAS) Tutorial
  ☆40Updated 6 years ago
• Nealelab / whole_genome_analysis_pipeline
  ☆20Updated 2 years ago
• adhikari-statgen-lab / fastman
  An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
  ☆39Updated 2 months ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago