opain / Predicting-TWAS-features
Tool for predicting TWAS features (e.g. gene expression) in a target sample
☆16Updated 3 months ago
Alternatives and similar repositories for Predicting-TWAS-features:
Users that are interested in Predicting-TWAS-features are comparing it to the libraries listed below
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated last year
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- R script that performs gene-set or gene property analysis using TWAS results.☆31Updated 6 months ago
- This is a pipeline for calculating weights for TWAS☆30Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆16Updated 5 months ago
- MR-link-2: pleiotropy robust cis MR☆13Updated last week
- R script to make Manhattan-style plot for TWAS☆37Updated 3 years ago
- Fine-mapping method only using summary statistics☆18Updated 9 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated last year
- An R package for creating ggplot2 based miami plots.☆16Updated last month
- Software to infer latent pleiotropic components from GWAS summary data☆13Updated 2 months ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.☆15Updated 3 years ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆11Updated last month
- GENI plots to visualise results from genome-wide association studies☆27Updated 5 months ago
- ☆18Updated last year
- Code and simulations using interaction-LD score regression☆13Updated 9 months ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated last year
- ☆20Updated 7 months ago
- Transcriptome-wide association study of Major Depressive Disorder☆12Updated 4 years ago
- ☆14Updated last month
- ☆11Updated 9 months ago
- A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics☆33Updated 3 years ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆16Updated 2 months ago
- ☆8Updated 2 months ago
- Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.☆23Updated this week
- Create Regional Association Plots☆11Updated 8 months ago
- Regional association plots☆25Updated last year