opain / Predicting-TWAS-featuresLinks
Tool for predicting TWAS features (e.g. gene expression) in a target sample
☆16Updated 2 months ago
Alternatives and similar repositories for Predicting-TWAS-features
Users that are interested in Predicting-TWAS-features are comparing it to the libraries listed below
Sorting:
- R script for generating functionally informed genetic risk scores from TWAS☆11Updated 2 years ago
- Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies☆11Updated 3 years ago
- Fine-mapping method only using summary statistics☆20Updated 9 years ago
- Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)☆12Updated 2 years ago
- Integration of TWAS and Colocalization Analysis☆17Updated 10 months ago
- R script that performs gene-set or gene property analysis using TWAS results.☆32Updated last year
- PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics☆12Updated last year
- Workflow for performing cistrome-wide associations studies☆10Updated 3 years ago
- Estimate genetic correlation using predicted expression☆22Updated 7 years ago
- Summary-level Unified Method for Modeling Integrated Transcriptome☆10Updated 2 years ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆11Updated last month
- GENI plots to visualise results from genome-wide association studies☆30Updated 11 months ago
- Create Regional Association Plots☆12Updated last week
- ☆18Updated last month
- R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"☆15Updated last month
- This is a pipeline for calculating weights for TWAS☆32Updated 3 years ago
- ☆19Updated last week
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆13Updated 2 months ago
- Software to infer latent pleiotropic components from GWAS summary data☆15Updated 7 months ago
- MR-link-2: pleiotropy robust cis MR☆20Updated last month
- ☆19Updated last month
- ☆21Updated last year
- An R package for creating ggplot2 based miami plots.☆17Updated 6 months ago
- Leveraging functional information to improve GWAS summary statistic imputation☆19Updated 4 years ago
- LOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.☆27Updated last month
- Stratified squared trans-ethnic genetic correlation☆14Updated 3 years ago
- Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.☆41Updated 7 years ago
- ☆12Updated last year
- Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data☆17Updated 3 months ago
- Collaborative genetic studies of idiopathic pulmonary fibrosis☆18Updated 7 months ago