Alternatives and similar repositories for Predicting-TWAS-features

Users that are interested in Predicting-TWAS-features are comparing it to the libraries listed below

• opain / Inferred-functional-risk-scoring
  R script for generating functionally informed genetic risk scores from TWAS
  ☆11Updated last year
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated 2 years ago
• opain / TWAS-GSEA
  R script that performs gene-set or gene property analysis using TWAS results.
  ☆31Updated 9 months ago
• mglev1n / mrSampleOverlap
  Estimate Bias Due To Sample Overlap In Mendelian Randomization Studies
  ☆11Updated 2 years ago
• opain / Calculating-FUSION-TWAS-weights-pipeline
  This is a pipeline for calculating weights for TWAS
  ☆32Updated 2 years ago
• jokamoto97 / INTACT
  Integration of TWAS and Colocalization Analysis
  ☆17Updated 7 months ago
• hailianghuang / FM-summary
  Fine-mapping method only using summary statistics
  ☆19Updated 9 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• cnfoley / mrclust
  R package for investigating clustered heterogeneity in Mendelian randomization (MR) analyses.
  ☆17Updated 3 years ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆15Updated 4 months ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated 2 years ago
• jrs95 / geni.plots
  GENI plots to visualise results from genome-wide association studies
  ☆28Updated 8 months ago
• ckhunsr1 / PUMICE
  PUMICE: Prediction Using Models Informed by Chromatin conformations and Epigenomics
  ☆12Updated last year
• opain / eQTL_to_TWAS
  Methods for converting eQTL summary statistics into TWAS SNP-weights
  ☆13Updated this week
• LizaDarrous / PheWAS-cluster
  ☆20Updated 10 months ago
• opain / TWAS-plotter
  R script to make Manhattan-style plot for TWAS
  ☆37Updated 3 years ago
• genomicsITER / PFgenetics
  Collaborative genetic studies of idiopathic pulmonary fibrosis
  ☆17Updated 4 months ago
• cuelee / pleio
  ☆19Updated last year
• opain / MDD-TWAS
  Transcriptome-wide association study of Major Depressive Disorder
  ☆12Updated 4 years ago
• YuyingLi-X / HDL-L
  The local version of high-definition likelihood inference of genetic correlations (HDL-L)
  ☆11Updated last month
• adriaan-vd-graaf / mrlink2
  MR-link-2: pleiotropy robust cis MR
  ☆16Updated last month
• precimed / gsa-mixer
  ☆16Updated 4 months ago
• mglev1n / locusplotr
  Create Regional Association Plots
  ☆12Updated 10 months ago
• dongjunchung / GPA
  GPA: Genetic analysis incorporating Pleiotropy and Annotation
  ☆15Updated 5 years ago
• juliedwhite / miamiplot
  An R package for creating ggplot2 based miami plots.
  ☆17Updated 3 months ago
• hakyimlab / brainxcan
  ☆8Updated 4 months ago
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated last year
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• szcf-weiya / MTWAS
  R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
  ☆15Updated 11 months ago
• ZhaotongL / cisMRcML
  ☆12Updated last year