emvolz-phylodynamics / treestructureLinks
☆18Updated last month
Alternatives and similar repositories for treestructure
Users that are interested in treestructure are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆25Updated last month
- ☆19Updated last year
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- Bacterial phylogenetics in BEAST 2.☆17Updated 2 years ago
- ☆11Updated 2 years ago
- ☆17Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated last month
- Reconstruction of transmission trees using genomic data☆63Updated last year
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆39Updated last month
- ☆18Updated 3 years ago
- Read contamination removal☆25Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆11Updated 6 months ago
- Reference genome quality scores☆21Updated 4 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- ☆20Updated 10 months ago
- a re-packaging of the sankey plot function for kraken reports taken from pavian and sankeyD3 from Florian Breitwieser☆13Updated 6 years ago
- Demographic inference from whole genomes☆13Updated 2 years ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 4 months ago
- initial commit☆26Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- Estimating time trees from very large phylogenies☆27Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆12Updated 6 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 4 months ago
- Module for analysing admixture graphs☆28Updated 7 years ago
- HyPhy tutorials☆11Updated 7 years ago