emvolz-phylodynamics / treestructureLinks
☆18Updated 3 weeks ago
Alternatives and similar repositories for treestructure
Users that are interested in treestructure are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated last month
- ☆19Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Reconstruction of transmission trees using genomic data☆63Updated 2 years ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated 3 weeks ago
- Read contamination removal☆25Updated last year
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- ☆11Updated 2 years ago
- ☆18Updated last year
- ☆19Updated 3 years ago
- ☆11Updated 4 years ago
- ☆11Updated 8 months ago
- Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler☆16Updated last year
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆42Updated 3 months ago
- Estimating time trees from very large phylogenies☆28Updated last year
- transposable element typing pipeline☆19Updated last year
- Reference genome quality scores☆21Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- C++ tools for NCBI taxonomy tasks☆11Updated 4 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 7 years ago
- A set of scripts for calculating pairwise SNP distance☆42Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- R We There Yet?☆31Updated 7 months ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated 2 years ago
- De novo VIral Genome Annotator☆23Updated last year