emvolz-phylodynamics / treestructureLinks
☆18Updated 3 months ago
Alternatives and similar repositories for treestructure
Users that are interested in treestructure are comparing it to the libraries listed below
Sorting:
- Scalable relaxed clock phylogenetic dating☆27Updated 4 months ago
- ☆19Updated last year
- Bacterial phylogenetics in BEAST 2.☆18Updated 2 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Updated 2 years ago
- R We There Yet?☆32Updated 9 months ago
- ☆18Updated last year
- ☆19Updated 4 years ago
- Read contamination removal☆25Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Reconstruction of transmission trees using genomic data☆71Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Reference genome quality scores☆21Updated 5 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Updated 7 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated last month
- Performing highly efficient genome scans for local adaptation with R package pcadapt v4☆43Updated 5 months ago
- transposable element typing pipeline☆19Updated last year
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- ☆11Updated 4 years ago
- ☆12Updated 2 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 9 months ago
- Phylogenetics between and within hosts at once, all along the genome.☆50Updated last year
- A set of scripts for calculating pairwise SNP distance☆44Updated 3 years ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- ☆11Updated 11 months ago
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- De novo VIral Genome Annotator☆23Updated last week
- A Nextflow pipeline for running synteny analysis.☆16Updated 7 months ago