klarman-cell-observatory/sc_eVIP external links

---

GitHub - View repository

GitHub.dev - Open in online code editor

Star history - Growth chart over time

deps.dev - Dependencies and security vulnerabilities

Gitingest - Export source code for LLM usage

Repomix - Export source code for LLM usage

uithub - Export source code for LLM usage

Close

klarman-cell-observatory/sc_eVIP

Readme badge preview -

If you own this repo, copy the snippet below and add it to your README.md

---

Copy

[![RelatedRepos](https://img.shields.io/badge/related-repos-yellow)](https://relatedrepos.com/gh/klarman-cell-observatory/sc_eVIP)

Close

klarman-cell-observatory / sc_eVIPView on GitHubMore

• External links
• Readme badge

Variant impact phenotyping using Perturb-seq

☆10Apr 22, 2024Updated last year

Alternatives and similar repositories for sc_eVIP

Users that are interested in sc_eVIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.

• klarman-cell-observatory / perturbseq

  View on GitHub
  Perturb-seq analysis package
  ☆16May 2, 2024Updated last year
• klarman-cell-observatory / Perturb-CITE-seq

  View on GitHub
  ☆15Jun 2, 2022Updated 3 years ago
• BatadaLab / scID

  View on GitHub
  scID
  ☆14Oct 21, 2021Updated 4 years ago
• theislab / ncem_tutorials

  View on GitHub
  ☆13Aug 9, 2022Updated 3 years ago
• qunhualilab / hicrep

  View on GitHub
  R package to evaluate reproducibility of Hi-C data
  ☆10Mar 16, 2023Updated 3 years ago
• Singular-Genomics / singular-demux

  View on GitHub
  Singular Genomics Demultiplexing Tool
  ☆16Mar 5, 2024Updated 2 years ago
• kundajelab / keras

  View on GitHub
  Theano-based Deep Learning library (convnets, recurrent neural networks, and more).
  ☆14Aug 2, 2017Updated 8 years ago
• klarman-cell-observatory / covid19-autopsy

  View on GitHub
  ☆11May 6, 2021Updated 4 years ago
• YosefLab / totalVI_reproducibility

  View on GitHub
  ☆18Sep 13, 2022Updated 3 years ago
• gersteinlab / HiC-spector

  View on GitHub
  Spectral and reproducibility analysis of Hi-C contact maps
  ☆13Mar 18, 2021Updated 5 years ago
• thomasmaxwellnorman / perturbseq_demo

  View on GitHub
  Tutorial for using the perturbseq library to load and manipulate experiments
  ☆24Aug 7, 2019Updated 6 years ago
• KPMP / Cell-State-Atlas-2022

  View on GitHub
  Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney
  ☆25Mar 7, 2024Updated 2 years ago
• cegx-ds / couplet

  View on GitHub
  ☆11Oct 31, 2022Updated 3 years ago
• xushiabbvie / TDtool

  View on GitHub
  ☆12Jan 8, 2026Updated 2 months ago
• SURF-ML / 2D-VQ-AE-2

  View on GitHub
  2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology
  ☆16Jul 18, 2024Updated last year
• Katsevich-Lab / sceptre

  View on GitHub
  An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.
  ☆35Sep 4, 2025Updated 6 months ago
• daewoooo / StrandPhaseR

  View on GitHub
  R Package for phasing of single cell Strand-seq data
  ☆10Jan 14, 2025Updated last year
• Teichlab / limbcellatlas

  View on GitHub
  This repository contains codes used for the human fetal limb cell atlas.
  ☆17Jan 28, 2025Updated last year
• masai1116 / SHARE-seq-alignment

  View on GitHub
  pipeline for demultiplex and align both ATAC and RNA data generated in SHARE-seq
  ☆16Jun 20, 2022Updated 3 years ago
• jtleek / svaseq

  View on GitHub
  Analysis for svaseq paper
  ☆20Aug 20, 2014Updated 11 years ago
• ElementoLab / utag

  View on GitHub
  ☆42Mar 12, 2026Updated last week
• friedue / course_RNA-seq2015

  View on GitHub
  ☆14Aug 9, 2016Updated 9 years ago
• const-ae / transformGamPoi-Paper

  View on GitHub
  ☆29Sep 4, 2023Updated 2 years ago
• MarioniLab / oor_design_reproducibility

  View on GitHub
  ☆16Sep 1, 2023Updated 2 years ago
• asncd / MIMOSCA

  View on GitHub
  A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.
  ☆97Jul 31, 2019Updated 6 years ago
• bxlab / hifive

  View on GitHub
  Tools for handling HiC and 5C data
  ☆24Feb 5, 2024Updated 2 years ago
• Jianhua-Wang / GWAS-pipeline

  View on GitHub
  From QC to summary statistics
  ☆17Jun 27, 2020Updated 5 years ago
• evasnow1992 / S-VQ-VAE

  View on GitHub
  Supervised Vector-Quantized Autoencoder
  ☆20Jul 6, 2021Updated 4 years ago
• ChaissonLab / hmcnc

  View on GitHub
  Hidden Markov Model based Copy number caller
  ☆20Dec 9, 2025Updated 3 months ago
• AllonKleinLab / paper-data

  View on GitHub
  ☆24Oct 6, 2025Updated 5 months ago
• ml4bio / CRISP

  View on GitHub
  Nature Computational Science: Predicting drug responses of unseen cell types through transfer learning with foundation models
  ☆35Feb 2, 2026Updated last month
• Xinglab / PEGASAS

  View on GitHub
  Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
  ☆20Jun 16, 2022Updated 3 years ago
• VIDA-NYU / bdi-kit

  View on GitHub
  A Python toolkit for biomedical data integration and harmonization
  ☆19Mar 9, 2026Updated 2 weeks ago
• arnavm / multimodal-scRNA-seq

  View on GitHub
  Figure depicting the breadth of multimodal scRNA-seq technologies
  ☆16Apr 3, 2019Updated 6 years ago
• hemberg-lab / sc3s

  View on GitHub
  Single Cell Consensus Clustering with Speed
  ☆21Dec 12, 2022Updated 3 years ago
• josephreplogle / guide_calling

  View on GitHub
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆41Jun 18, 2023Updated 2 years ago
• ICGC-TCGA-PanCancer / pcawg_delly_workflow

  View on GitHub
  A mirror of https://bitbucket.org/weischen/pcawg-delly-workflow
  ☆18Jan 22, 2020Updated 6 years ago
• songlab-cal / rna-sieve

  View on GitHub
  A library for the deconvolution of bulk cell samples using single-cell RNA expression data.
  ☆23Nov 3, 2021Updated 4 years ago
• broadinstitute / protigy

  View on GitHub
  Proteomics Toolset for Integrative Data Analysis
  ☆26Oct 7, 2025Updated 5 months ago