Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data
☆24Oct 7, 2026Updated last week
Alternatives and similar repositories for scCausalVI
Users that are interested in scCausalVI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CellNavi is a deep learning framework designed to predict genes driving cellular transitions.☆57Jul 10, 2026Updated 3 months ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 8 months ago
- GenePert: Leveraging GenePT Embeddings for Gene Perturbation Prediction☆24Oct 29, 2024Updated last year
- Reproducibility of results/figures from scvi-hub paper☆15Apr 16, 2025Updated last year
- ☆42Jun 8, 2026Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Biwhitened PCA☆15Mar 18, 2026Updated 7 months ago
- Robust and scalable single-cell signature scoring☆29Oct 14, 2026Updated last week
- A computational framework☆20Jul 23, 2026Updated 2 months ago
- ☆20May 29, 2026Updated 4 months ago
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆54May 27, 2026Updated 4 months ago
- Fast and Scalable Single Cell Differential Expression Analysis using Mixed-effects Models☆14Apr 8, 2026Updated 6 months ago
- R implementation of GeneTrajectory☆72May 9, 2026Updated 5 months ago
- R package for gene selection using k-NN graphs.☆15Jun 12, 2023Updated 3 years ago
- ☆26Oct 12, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- K-means clustering for large single-cell datasets☆13Feb 10, 2026Updated 8 months ago
- ☆32Apr 23, 2026Updated 5 months ago
- ☆117Sep 7, 2026Updated last month
- Autonomous multi-agent framework to optimize scientific software☆53Sep 13, 2026Updated last month
- Interpret perturbation responses from scRNA-seq perturbation experiments☆20Mar 4, 2025Updated last year
- ☆30Mar 12, 2026Updated 7 months ago
- Probability Model of Accessible Chromatin of Single cells☆11Aug 14, 2026Updated 2 months ago
- R package IReNA☆31Nov 13, 2024Updated last year
- Identifying cell subpopulational differences among single-cell biospecimens☆17Sep 27, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆24Aug 17, 2026Updated 2 months ago
- R package for CS-CORE, a statistical method for cell-type-specific co-expression inference from single cell RNA-sequencing data☆31May 4, 2026Updated 5 months ago
- A tool for identifying Phenotype-Associated cell Subpopulations from single-cell sequencing data by integrating bulk data☆20Jan 16, 2026Updated 9 months ago
- Use hodge decomposition for trajectory analysis☆26May 11, 2026Updated 5 months ago
- k-NN-based mapping of cells across representations to transfer labels, embeddings, and expression values.☆17Updated this week
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆29Jan 3, 2025Updated last year
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Single cell omics biology annotations☆63Sep 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆41Aug 31, 2026Updated last month
- RIPPLE - Spatial transcriptomics analysis of a cell's influence on its neighbors' transcriptome☆41Sep 14, 2026Updated last month
- Learning meaningful representations of genes☆21Jul 7, 2025Updated last year
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆11Oct 27, 2023Updated 2 years ago
- ☆191Jan 30, 2026Updated 8 months ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆44Nov 10, 2025Updated 11 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆93Mar 20, 2025Updated last year