ShaokunAn / scCausalVIView external linksLinks
Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data
☆19Dec 16, 2025Updated last month
Alternatives and similar repositories for scCausalVI
Users that are interested in scCausalVI are comparing it to the libraries listed below
Sorting:
- SIGnature is a Python package that empowers researchers to rapidly query gene sets across diverse single-cell RNA sequencing (scRNA-seq) …☆23Dec 12, 2025Updated 2 months ago
- ☆36Mar 8, 2025Updated 11 months ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- ☆24Oct 1, 2025Updated 4 months ago
- ☆29Sep 4, 2023Updated 2 years ago
- Full annotation using shape-constrained trees☆28Sep 15, 2023Updated 2 years ago
- Stack is a single-cell foundation model that enables in-context learning at inference time.☆79Jan 30, 2026Updated 2 weeks ago
- A repository for benchmarking spatial deconvolution and mapping tools☆36May 13, 2025Updated 9 months ago
- ☆38Jan 19, 2026Updated 3 weeks ago
- a dataloader to work with large single cell datasets from lamindb☆34Feb 4, 2026Updated last week
- Distributed single-cell data analysis.☆36Feb 3, 2026Updated last week
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Nov 4, 2023Updated 2 years ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆40Aug 20, 2025Updated 5 months ago
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆42Nov 22, 2024Updated last year
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- ☆45Jan 28, 2026Updated 2 weeks ago
- Automatically interact with SVG charts.☆18Sep 23, 2025Updated 4 months ago
- ☆10Dec 17, 2019Updated 6 years ago
- Biwhitened PCA☆14Feb 3, 2026Updated last week
- ☆12Apr 3, 2025Updated 10 months ago
- A web-based, time-series visualizer for tracked segmented data.☆13Updated this week
- ☆11Updated this week
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 9 months ago
- Filters for Next Generation Sequencing☆12Oct 31, 2024Updated last year
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Apr 2, 2023Updated 2 years ago
- scAce: an adaptive embedding and clustering method for scRNA-seq data☆12Sep 8, 2023Updated 2 years ago
- ☆12Jun 6, 2024Updated last year
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated 9 months ago
- Public repo containing code to train, visualize, and evaluate semi-supervised topic models and baselines for regression/classification on…☆12Apr 15, 2020Updated 5 years ago
- Optimal gating strategies for flow and mass cytometry.☆16Nov 5, 2025Updated 3 months ago
- A Web extension to browse social media websites with purpose.☆12Feb 7, 2025Updated last year
- ☆39Jan 27, 2026Updated 2 weeks ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 5 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆59Feb 5, 2026Updated last week
- ☆12May 29, 2024Updated last year
- Minibatch loading for on-disk anndata files, co-developed by Lamin Labs and scverse☆24Updated this week
- An introduction to OME-Zarr for big bioimaging data☆24Updated this week
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Mar 10, 2022Updated 3 years ago
- Annotate 2D point clouds using overlay polygons☆15Jun 19, 2025Updated 7 months ago