kosekijkk / raman2rna
Raman2RNA code base.
☆11Updated last year
Related projects ⓘ
Alternatives and complementary repositories for raman2rna
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆48Updated 2 years ago
- Biological Network Integration using Convolutions☆59Updated 10 months ago
- ☆61Updated last year
- using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions☆55Updated 3 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Updated 2 months ago
- Code for "Predicting Cellular Responses to Novel Drug Perturbations at a Single-Cell Resolution", NeurIPS 2022.☆104Updated 3 months ago
- Cell2Sentence turns scRNA-seq data into text for LLM training.☆84Updated 2 months ago
- This repository implements Graph Variational Causal Inference (graphVCI), a framework that integrates prior knowledge of relational infor…☆15Updated last year
- ☆49Updated 2 months ago
- spatial transcriptome, single cell☆65Updated last year
- scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models☆22Updated 3 months ago
- ☆14Updated 2 years ago
- The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell leve…☆88Updated 3 months ago
- High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations☆47Updated last year
- Deep Generative Modeling of RNA Velocity☆35Updated 3 weeks ago
- ☆19Updated last year
- PerturbNet is a deep generative model that can predict the distribution of cell states induced by chemical or genetic perturbation☆29Updated last week
- code repo for Set2Gaussian☆15Updated 4 years ago
- A Python toolkit for setting up benchmarking dataset using biomedical networks☆21Updated last week
- Template repository for creating novel models with scvi-tools☆19Updated last year
- SIMBA: SIngle-cell eMBedding Along with features☆56Updated last month
- Learning cell communication from spatial graphs of cells☆103Updated 10 months ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated last year
- ☆44Updated last year
- ☆15Updated 2 years ago
- single cell foundation model for Gene network inference and more☆27Updated this week
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆24Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 6 months ago
- Repository for Nicheformer: a foundation model for single-cell and spatial omics☆65Updated 6 months ago
- A model developed for the generation of scRNA-seq data☆38Updated 2 months ago