Alternatives and similar repositories for LotsOfCells

Users that are interested in LotsOfCells are comparing it to the libraries listed below

• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated this week
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated 3 months ago
• Vivianstats / scLink
  Inferring gene co-expression networks from single cell gene expression data
  ☆28Updated 3 years ago
• UPSUTER / GEMLI
  ☆32Updated 11 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• Zhen-Miao / PICsnATAC
  Paired Insertion Counting for snATAC-seq data
  ☆18Updated 8 months ago
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆35Updated 4 years ago
• single-cell-genetics / XClone
  Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.
  ☆38Updated 2 months ago
• cellatlas / human
  ☆44Updated last year
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• bigomics / plaid
  Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data
  ☆18Updated last week
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆22Updated last year
• limin321 / stmut
  Visualizing Somatic Alterations of 10X Spatial Transcriptomics Data
  ☆14Updated last year
• jacobhepkema / scover
  scover
  ☆24Updated 2 years ago
• salzman-lab / SICILIAN
  ☆23Updated last year
• tuonglab / dandelionR
  Single-cell immune repertoire trajectory analysis in R
  ☆11Updated 5 months ago
• wenweixiong / MARVEL
  ☆53Updated last year
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆32Updated 9 months ago
• songlab-cal / scquint
  ☆18Updated last year
• satijalab / Mixscale
  ☆23Updated 3 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆24Updated last year
• semraulab / phiclust
  A clusterability measure for scRNA-seq data.
  ☆18Updated 3 years ago
• fmicompbio / monaLisa
  binned motif enrichment analysis and visualisation
  ☆43Updated 2 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated 4 months ago
• BoevaLab / ANS_signature_scoring
  ANS_signature_scoring: A gene expression signature scoring Python package.
  ☆16Updated 3 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆20Updated last year
• lcmmichielsen / scHPL
  ☆37Updated 10 months ago