R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
☆23May 6, 2026Updated last month
Alternatives and similar repositories for LotsOfCells
Users that are interested in LotsOfCells are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆29May 16, 2024Updated 2 years ago
- BiocompR is a R package build upon ggplot2 to improve commonly used plots dedicated to data comparison, dataset exploration and, ultimate…☆18Jan 15, 2025Updated last year
- Meta-analysis of drug target evidence in single-cell data☆17Oct 22, 2024Updated last year
- Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks☆27Apr 3, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆61Sep 17, 2024Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆26Feb 2, 2026Updated 4 months ago
- ☆101May 4, 2026Updated last month
- Aligning gene expression trajectories of single-cell reference and query systems☆88Aug 10, 2025Updated 10 months ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Code, data and analysis for moslin.☆15Oct 7, 2024Updated last year
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Querying cellular states and programs by learning representations of gene sets☆16Nov 2, 2025Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An end-to-end computational pipeline for large Perturb-seq screens☆15Apr 25, 2025Updated last year
- Repository detailing updated allowlisting and clonal analysis workflow☆11Feb 1, 2025Updated last year
- scVI extension for unspliced RNA☆15May 18, 2025Updated last year
- A tool for extracting and archiving Last.fm music listening data☆12Oct 11, 2024Updated last year
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆42Nov 18, 2021Updated 4 years ago
- PULSAR: a Foundation Model for Multi-scale and Multicellular Biology☆34Mar 1, 2026Updated 3 months ago
- From geospatial to spatial -omics☆103May 8, 2026Updated last month
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Aug 24, 2023Updated 2 years ago
- Convert your single-cell/spatial analyses to parallel HPC/cloud workflows just using pipes in R☆18May 19, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Toolkit for metacell analysis☆23Aug 8, 2024Updated last year
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 11 months ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆33Jul 13, 2023Updated 2 years ago
- ☆12Aug 8, 2024Updated last year
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆35Sep 11, 2025Updated 9 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆66Apr 14, 2024Updated 2 years ago
- ANS_signature_scoring: A gene expression signature scoring Python package.☆19Jan 18, 2026Updated 5 months ago
- ☆13Oct 28, 2024Updated last year
- ☆27Dec 17, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python code for cross-condition label refinement in single-cell data with HiDDEN☆14Sep 21, 2024Updated last year
- Finding gene expression states in scRNA-seq data☆51Mar 22, 2024Updated 2 years ago
- Multi-slice Spatial Transcriptome Domain Analysis.☆13Dec 13, 2024Updated last year
- Single-cell Mutual Information-based Network Engineering Ranger☆25Aug 28, 2025Updated 9 months ago
- ☆49Oct 29, 2025Updated 7 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆17Oct 5, 2024Updated last year
- Single-cell Iso Prep☆17Oct 28, 2023Updated 2 years ago