Scripts to reproduce analyses of tradeSeq paper.
☆16Feb 5, 2020Updated 6 years ago
Alternatives and similar repositories for tradeSeqPaper
Users that are interested in tradeSeqPaper are comparing it to the libraries listed below
Sorting:
- single-cell decorrelated module networks☆30Aug 24, 2024Updated last year
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- R and MATLAB scripts for MAGICAL☆11Jun 26, 2024Updated last year
- MuDCoD: Multi-subject Dynamic Community Detection☆12Mar 18, 2025Updated 11 months ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- The official implementation for "SANGO".☆11Mar 17, 2024Updated last year
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆10Sep 26, 2019Updated 6 years ago
- Selection outlier scan with population branch statistic☆15Feb 21, 2024Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- ☆15Feb 28, 2022Updated 4 years ago
- ☆19Mar 31, 2023Updated 2 years ago
- ☆40Jul 14, 2023Updated 2 years ago
- Spatiotemporal single-cell RNA sequencing of developing hearts reveals interplay between cellular differentiation and morphogenesis☆13Oct 31, 2023Updated 2 years ago
- ☆18Jan 13, 2025Updated last year
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data☆11Jul 11, 2024Updated last year
- ☆36Nov 29, 2021Updated 4 years ago
- Vaeda method for computational doublet annotation☆18Feb 1, 2026Updated last month
- A robust DE test method that accounts for the uncertainty in pseudotime inference☆39Mar 2, 2025Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆17Sep 9, 2025Updated 5 months ago
- ☆19Sep 29, 2021Updated 4 years ago
- Paired Insertion Counting for snATAC-seq data☆19May 12, 2025Updated 9 months ago
- Marker gene selection from scRNA-seq data☆16Sep 15, 2020Updated 5 years ago
- ☆17Jul 13, 2024Updated last year
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆25Mar 7, 2024Updated last year
- A collection of project templates and useful functions for single-cell data analysis with Scanpy.☆21Jun 12, 2023Updated 2 years ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated 2 years ago
- Phenotype Associated Spatial Signature Analysis with Graph-based Embedding☆26Mar 5, 2025Updated 11 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆97Jan 30, 2026Updated last month
- ☆21Dec 23, 2024Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Human Endometrial Cell Atlas (HECA). An integrated single-cell reference atlas of the human endometrium.☆30Jun 19, 2024Updated last year
- ☆63Aug 26, 2025Updated 6 months ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Jul 20, 2024Updated last year
- Landscape Single Cell Entropy☆21Aug 24, 2020Updated 5 years ago