Filters for Next Generation Sequencing
☆12Oct 31, 2024Updated last year
Alternatives and similar repositories for FiNGS
Users that are interested in FiNGS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Apr 2, 2020Updated 5 years ago
- ☆13Apr 30, 2019Updated 6 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated last year
- ☆16May 8, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Homologous recombination deficiency in TCGA PanCancer Atlas☆30Dec 31, 2020Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Feb 27, 2026Updated last month
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Aug 21, 2025Updated 7 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- ☆21Sep 22, 2022Updated 3 years ago
- Visualization tool for temporal clonal evolution.☆18Mar 13, 2020Updated 6 years ago
- Concordance and contamination estimator for tumor–normal pairs☆59Oct 22, 2024Updated last year
- Integrative analysis of complex structural variants☆22Sep 7, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 8 months ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆71Mar 19, 2026Updated last week
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- A GA4GH Draft Beacon implementation☆11Oct 23, 2015Updated 10 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 5 months ago
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- ☆36Mar 16, 2021Updated 5 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Utility functions to extend and optimize GenomicRanges functionality.☆10Mar 6, 2025Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Software used by Trinity CTAT for building CTAT Genome Libs, resource databases shared by Trinity CTAT components☆10Apr 28, 2025Updated 10 months ago
- A suite of scientific workflows to assess metrics to compare efficacy of protein-based tumor deconvolution algorithms.☆16Jan 15, 2024Updated 2 years ago
- Program for estimating admixture proportions and doing principal component analysis of a single NGS sample☆11Aug 15, 2024Updated last year
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆45Aug 15, 2025Updated 7 months ago
- Create swimmer plots with ggplot2☆33Mar 11, 2026Updated 2 weeks ago
- HgvsGo is a program designed for analyzing "c." and "p." HGVS (Human Genome Variation Society) notations for single nucleotide variations…☆17Nov 20, 2024Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆10Apr 20, 2018Updated 7 years ago
- shifts hg19/38 genomic position for feasible input format.☆12Jun 8, 2023Updated 2 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13May 21, 2024Updated last year
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Likelihood-based Selective Sweep Detection☆41Oct 12, 2023Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Apr 18, 2024Updated last year
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago