cpwardell / FiNGSLinks
Filters for Next Generation Sequencing
☆12Updated 8 months ago
Alternatives and similar repositories for FiNGS
Users that are interested in FiNGS are comparing it to the libraries listed below
Sorting:
- Third-generation fusion gene detection☆14Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated last year
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- A transposition caller.☆10Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 4 months ago
- ☆18Updated 3 years ago
- Scripts involved in our workflow for detecting CNVs from WGS data using read depth-based methods☆46Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- ☆24Updated 11 months ago
- Genomic VCF to tab-separated values☆47Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Interactive multiscale visualization for structural variation in human genomes☆70Updated last week
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆28Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- ☆23Updated 7 months ago