cpwardell / FiNGSLinks
Filters for Next Generation Sequencing
☆12Updated last year
Alternatives and similar repositories for FiNGS
Users that are interested in FiNGS are comparing it to the libraries listed below
Sorting:
- A set of tools to annotate VCF files with expression and readcount data☆30Updated 10 months ago
- Third-generation fusion gene detection☆13Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Updated 2 weeks ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 3 months ago
- ☆26Updated last year
- ☆18Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- ☆24Updated last year
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 5 months ago
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Codes for the Iso-Seq variant-calling paper☆11Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 5 months ago
- ☆11Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 10 months ago
- ☆13Updated 3 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Genomic VCF to tab-separated values☆48Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 11 months ago
- Version II of Mandalorion☆32Updated 6 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago