KhiabanianLab / All-FITLinks
All-FIT - Allele-Frequency-based Imputation of Tumor Purity
☆18Updated 5 years ago
Alternatives and similar repositories for All-FIT
Users that are interested in All-FIT are comparing it to the libraries listed below
Sorting:
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Fork of the Polysolver project☆31Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆19Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- ☆19Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- Workflow for Sequenza, cellularity and ploidy☆20Updated 3 weeks ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Updated 5 years ago
- ☆12Updated 2 years ago
- ☆25Updated last year
- wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data☆28Updated 3 years ago
- Analysis pipelines for cancer genome sequencing in mice.☆21Updated last year
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- ☆25Updated last year
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- ☆14Updated 3 months ago
- ☆11Updated 2 years ago
- ☆23Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- MicrOSAtellite Instability Classifier☆15Updated 7 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆13Updated 2 years ago