Alternatives and similar repositories for ecTMB

Users that are interested in ecTMB are comparing it to the libraries listed below

• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆19Updated last month
• smshuai / DriverPower
  DriverPower
  ☆26Updated 9 months ago
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 8 months ago
• flemingtonlab / SpliceTools
  ☆17Updated last year
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆23Updated 2 months ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆23Updated last month
• cortes-ciriano-lab / ReConPlot
  ☆23Updated 10 months ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆36Updated last year
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆19Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆40Updated last year
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆25Updated 7 years ago
• PoisonAlien / somaticfreq
  knowledge-based genotyping of cancer hotspots from the tumor BAM files
  ☆21Updated 3 years ago
• sdchandra / CNAclinic
  ☆26Updated last year
• KhiabanianLab / All-FIT
  All-FIT - Allele-Frequency-based Imputation of Tumor Purity
  ☆18Updated 6 years ago
• alexchwong / SpliceWiz
  SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.
  ☆21Updated 8 months ago
• QingliGuo / FFPEsig
  Codes and Data for FFPEsig manuscript
  ☆17Updated last year
• ccbiolab / svpluscnv
  Integrative analysis of complex structural variants
  ☆22Updated 5 years ago
• Xinglab / rMATS-long
  ☆34Updated this week
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆20Updated 2 years ago
• a2iEditing / deNovo-Detect
  ☆13Updated 3 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆29Updated last year
• parklab / MuSiCal
  A comprehensive toolkit for mutational signature analysis
  ☆41Updated last year
• ShixiangWang / sigflow
  Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow
  ☆29Updated last year
• rvolden / Mandalorion-Episode-II
  Version II of Mandalorion
  ☆32Updated 6 years ago
• roland-rad-lab / MoCaSeq
  Analysis pipelines for cancer genome sequencing in mice.
  ☆21Updated last year