bioinform / ecTMB
☆19Updated 3 years ago
Alternatives and similar repositories for ecTMB:
Users that are interested in ecTMB are comparing it to the libraries listed below
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 2 months ago
- Filter and prioritize fusion calls☆20Updated 7 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆21Updated last month
- Workflow for Sequenza, cellularity and ploidy☆18Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- ☆23Updated 3 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- ☆24Updated 8 months ago
- DriverPower☆26Updated 3 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- Codes and Data for FFPEsig manuscript☆16Updated last year
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 8 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- ☆13Updated 7 years ago
- ☆22Updated 4 months ago
- R package for DNA methylation analysis☆18Updated 8 months ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- v2.x of the microassembly based somatic variant caller☆21Updated last week
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- ☆10Updated last year
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Somatic point mutation caller☆28Updated last week