☆18Aug 22, 2021Updated 4 years ago
Alternatives and similar repositories for ecTMB
Users that are interested in ecTMB are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline creation tool using Snakemake☆13Mar 5, 2026Updated 2 weeks ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- ☆12Nov 21, 2023Updated 2 years ago
- cnv-seq with custom bugfix☆10Mar 23, 2013Updated 13 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Feb 9, 2026Updated last month
- Tumor Mutational Burden☆65Updated this week
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆78Jun 30, 2025Updated 8 months ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 8 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 3 months ago
- Copy Number Variations (CNV) Simulator☆11Jul 30, 2018Updated 7 years ago
- ☆11May 12, 2021Updated 4 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- ☆122Sep 5, 2023Updated 2 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- Somatic indel discovery tool for tumor RNA-Seq data.☆24Nov 21, 2025Updated 4 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆115Sep 2, 2024Updated last year
- A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot☆76Nov 5, 2025Updated 4 months ago
- ☆171Updated this week
- QDNAseq package for Bioconductor☆54Jul 27, 2024Updated last year
- Generate Novel Insights from Gene Correlation Data☆14Jun 27, 2022Updated 3 years ago
- MicrOSAtellite Instability Classifier☆15Dec 12, 2017Updated 8 years ago
- RNA-seq for Mendelian disease diagnostics: A hands-on tutorial through bioinformatic tools and workflows☆17Mar 7, 2022Updated 4 years ago
- fastCNV R package to detect putative CNVs in single cell and spatial transcriptomics data☆41Mar 4, 2026Updated 2 weeks ago
- add true-negative SVs from a population callset to a truth-set.☆15Jun 17, 2022Updated 3 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Sep 12, 2024Updated last year
- SmallSeqFlow: A streamlined, notebook-based bulk RNA-seq analysis pipeline optimized for small-sample studies with modular extensions.☆17Feb 23, 2025Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Jun 16, 2021Updated 4 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Jul 15, 2019Updated 6 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- ASCAT R package☆199Feb 12, 2026Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year