bioinform / ecTMBLinks
☆18Updated 4 years ago
Alternatives and similar repositories for ecTMB
Users that are interested in ecTMB are comparing it to the libraries listed below
Sorting:
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated 2 weeks ago
- ☆17Updated last year
- Workflow for Sequenza, cellularity and ploidy☆22Updated 2 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆22Updated 3 weeks ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- DriverPower☆26Updated 9 months ago
- ☆23Updated 4 years ago
- Filter and prioritize fusion calls☆20Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 7 months ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- ☆33Updated 10 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 7 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- R package for DNA methylation analysis☆19Updated last year
- ☆26Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- v2.x of the microassembly based somatic variant caller☆23Updated 3 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last week
- ☆23Updated 10 months ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- A comprehensive toolkit for mutational signature analysis☆40Updated last year
- fastx-utils using klib☆20Updated 5 years ago