A command-line interface for Sentieon pipelines
☆15Jul 7, 2026Updated 2 weeks ago
Alternatives and similar repositories for sentieon-cli
Users that are interested in sentieon-cli are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Model files for Sentieon variant callers☆17Jun 2, 2026Updated last month
- A VCF comparison engine for structual variant benchmarking☆24Sep 26, 2025Updated 9 months ago
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comprehensive and intelligent clinical phasing tool☆14Dec 3, 2022Updated 3 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- Going through a setting up a basic cheminformatics pipeline for the target EGFR☆19Apr 1, 2025Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆21Jul 24, 2023Updated 2 years ago
- A pipeline creation tool using Snakemake☆14Updated this week
- Helper scripts for biological data processing from Sentieon☆65Apr 3, 2026Updated 3 months ago
- MutView is a tool to look the reads cover a mutation in bam file, output file is html format, just like a lightweight IGV(Integrative Gen…☆16May 27, 2026Updated last month
- ATaRVa - Analysis of Tandem Repeat Variation☆24Updated this week
- A suite of tools to generate random or mapped fastq files☆22Sep 15, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A best practices guide for Nextflow on Kubernetes☆22Nov 8, 2023Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Feb 17, 2025Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 11 months ago
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated last month
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 2 months ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- pangenome alignment, implicit/explicit graph, and variants for human pangenome project release 2☆21Jul 1, 2026Updated 3 weeks ago
- Complex structural variant visualization for HiFi sequencing data☆49Oct 24, 2025Updated 8 months ago
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Error correction of long reads☆16Jan 30, 2026Updated 5 months ago
- Applied Python Programming for Life Scientists☆28Feb 7, 2026Updated 5 months ago
- ☆30Jul 10, 2019Updated 7 years ago
- ☆13May 27, 2025Updated last year
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 7 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 8 months ago
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- TIDDIT - structural variant calling☆80Updated this week
- Repository☆10Oct 23, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Longread PacBio sequencing processing for WGS and PureTarget☆16Jun 25, 2026Updated 3 weeks ago
- CHM13 human reference genome issue tracking☆20Jan 18, 2024Updated 2 years ago
- A modern Python library for BaseSpace Clarity LIMS.☆15Oct 23, 2025Updated 8 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 4 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Apr 1, 2026Updated 3 months ago
- Reading ASD Binary Files in R☆15Sep 13, 2017Updated 8 years ago