A collection of tools to process single-cell omics datasets.
☆51May 29, 2025Updated 9 months ago
Alternatives and similar repositories for PISA
Users that are interested in PISA are comparing it to the libraries listed below
Sorting:
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆135Jan 19, 2026Updated last month
- barcode demultiplexing☆22Jun 4, 2019Updated 6 years ago
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated last year
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆27Dec 16, 2021Updated 4 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆40Nov 24, 2022Updated 3 years ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17Feb 4, 2026Updated last month
- Statistical Distributions from R☆12Apr 24, 2014Updated 11 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- ☆19Apr 14, 2024Updated last year
- Helper scripts for biological data processing from Sentieon☆64Jan 27, 2026Updated last month
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 5 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 4 years ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 3 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆125Updated this week
- ☆14May 12, 2023Updated 2 years ago
- Variant call adjudication☆16Jun 13, 2024Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Apr 14, 2025Updated 10 months ago
- a lightweight bam file depth statistical tool☆161Sep 13, 2024Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆21Nov 16, 2020Updated 5 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆91Oct 3, 2024Updated last year
- A toolkit of spatial transcriptomic analysis.☆274Feb 12, 2026Updated 3 weeks ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Dec 21, 2022Updated 3 years ago
- Inferring CNV from Single-Cell RNA-Seq☆653Nov 14, 2025Updated 3 months ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆246Aug 18, 2025Updated 6 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 3 years ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Feb 15, 2026Updated 2 weeks ago
- fastx-utils using klib☆20Sep 1, 2020Updated 5 years ago
- ☆21Jun 29, 2022Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- ☆21Dec 23, 2024Updated last year
- ☆11Sep 22, 2025Updated 5 months ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago