shiquan / PISA
A collection of tools to process single-cell omics datasets.
☆44Updated last week
Alternatives and similar repositories for PISA:
Users that are interested in PISA are comparing it to the libraries listed below
- ☆78Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆45Updated 7 months ago
- Analysis of Paired-Tag datasets☆39Updated last year
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- A quickstart tool for AmpliconArchitect. Performs all preliminary steps (alignment, CNV calling, seed interval detection) required prior …☆64Updated 3 weeks ago
- single-cell clustering based on alternative splicing landscapes☆19Updated last year
- SNV calling from single cell sequencing☆94Updated 4 months ago
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆28Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆40Updated this week
- release version☆51Updated 2 years ago
- ☆104Updated 3 weeks ago
- scWGCNA☆58Updated 2 years ago
- SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples☆68Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated last week
- Analysis pipeline for ATAC-seq Data☆60Updated 3 years ago
- ☆57Updated 4 years ago
- ☆47Updated 2 months ago
- ☆61Updated last year
- Repository for Cibersortx☆57Updated 4 years ago
- Tutorial Website☆57Updated 4 years ago
- Single Cell Analysis of Five'Ends☆48Updated last year
- ☆32Updated 9 months ago
- Functional Inference of Gene Regulation☆41Updated 8 months ago
- Links to ATAC-seq analysis tools☆65Updated 3 years ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago