A collection of tools to process single-cell omics datasets.
☆55Sep 17, 2026Updated last week
Alternatives and similar repositories for PISA
Users that are interested in PISA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.☆40Nov 24, 2022Updated 3 years ago
- The official pipeline for flexible and high-performance analysis of DNBelab C Serie single-cell data.☆165Aug 24, 2026Updated last month
- A pipeline for scRNA analysis under HPC☆11Jul 15, 2024Updated 2 years ago
- barcode demultiplexing☆22Jun 4, 2019Updated 7 years ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- SPATA Package for spatial gene expression analysis☆21May 6, 2022Updated 4 years ago
- A computation framework designed to detect differential junctions usage between two groups at single cell level☆13Feb 1, 2021Updated 5 years ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- RabbitMash: an efficient highly optimized implementation of Mash.☆20Oct 28, 2023Updated 2 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Deep fusion of spatial transcriptomics and histology images for interpretable high-definition embedding mapping☆17May 26, 2026Updated 4 months ago
- iterative clustering pipeline of big single cell datasets.☆41Sep 5, 2025Updated last year
- NOTE: This package has been renamed to sparrow and will be submitted to Bioconductor 3.14. Please use that package instead. This is kept …☆23Nov 16, 2020Updated 5 years ago
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Microbiome profiling☆15Nov 20, 2025Updated 10 months ago
- A public clone of the HypoMap Figure & analysis repository.☆12Sep 26, 2022Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆260Jun 28, 2026Updated 2 months ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- Helper scripts for biological data processing from Sentieon☆65Apr 3, 2026Updated 5 months ago
- ☆23Dec 23, 2024Updated last year
- Spatially constrained color profiling for visualizing single-cell resolution spatial data☆26Sep 23, 2024Updated 2 years ago
- Comparison, benchmarking & QC of epigenetic datasets☆19May 11, 2026Updated 4 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆16Jun 12, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FxTools: a comprehensive toolkit for FASTA and FASTQ file manipulation☆31Feb 16, 2022Updated 4 years ago
- A toolkit of spatial transcriptomic analysis.☆292Jul 17, 2026Updated 2 months ago
- Inferring CNV from Single-Cell RNA-Seq☆684Nov 14, 2025Updated 10 months ago
- a lightweight bam file depth statistical tool☆163Jul 2, 2026Updated 2 months ago
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- A tool to assess the quality of sequence read data☆137Updated this week
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆12Aug 25, 2024Updated 2 years ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆39Dec 23, 2025Updated 9 months ago
- ☆19Apr 14, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Predicting T Cell Receptor Specificity with Deep Learning