zic12345 / SR2019

Related projects ⓘ

Alternatives and complementary repositories for SR2019

• polyactis / Accucopy
  Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…
  ☆15Updated 8 months ago
• ding-lab / BICSEQ2
  BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA
  ☆16Updated 3 years ago
• vpc-ccg / svict
  Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA
  ☆25Updated 5 months ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated last year
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 7 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 4 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆27Updated 4 months ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆27Updated 2 months ago
• lganel / SVScore
  Prioritize structural variants based on CADD scores
  ☆28Updated 4 years ago
• TheJacksonLaboratory / JAX-CNV
  Official code repository for JAX-CNV
  ☆12Updated 4 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆22Updated 5 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated 2 years ago
• ExpressionAnalysis / CNV_Radar
  CNV Rapid Aberration Detection And Reporting
  ☆11Updated 3 years ago
• HurlesGroupSanger / indelible
  Structural Variation breakpoint discovery via adaptive learning
  ☆15Updated last year
• etal / cnvkit-examples
  Example datasets for CNVkit (http://github.com/etal/cnvkit)
  ☆19Updated 6 years ago
• HTGenomeAnalysisUnit / SCE-VCF
  Sample Contamination Estimate from VCF
  ☆19Updated 2 weeks ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 4 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 2 years ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆21Updated 3 months ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆25Updated 2 months ago
• PacificBiosciences / hg002-ccs
  ☆14Updated 3 years ago
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 2 years ago
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆15Updated 5 months ago
• oicr-gsi / debarcer
  Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes
  ☆15Updated 3 years ago
• hliang / cnv-seq
  cnv-seq with custom bugfix
  ☆11Updated 11 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆21Updated 2 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 6 years ago