zic12345 / SR2019
☆12Updated 2 years ago
Alternatives and similar repositories for SR2019:
Users that are interested in SR2019 are comparing it to the libraries listed below
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Updated last year
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆11Updated 2 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- v2.x of the microassembly based somatic variant caller☆20Updated last month
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- Official code repository for JAX-CNV☆12Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- A new tool to infer sex from massively parallel sequencing data.☆16Updated 10 months ago
- Third-generation fusion gene detection☆14Updated last year
- ☆23Updated 8 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated 9 months ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆14Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 3 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago