zic12345 / SR2019Links
☆12Updated 2 years ago
Alternatives and similar repositories for SR2019
Users that are interested in SR2019 are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 6 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 3 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 6 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆22Updated 6 months ago
- ☆51Updated 5 years ago
- cnv-seq with custom bugfix☆10Updated 12 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Third-generation fusion gene detection☆14Updated last year
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- DriverPower☆26Updated 5 months ago
- ☆20Updated 8 months ago