zic12345 / SR2019
☆12Updated 2 years ago
Alternatives and similar repositories for SR2019:
Users that are interested in SR2019 are comparing it to the libraries listed below
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆15Updated 11 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆18Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆12Updated 2 years ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆22Updated 6 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated last week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 8 months ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 8 months ago
- cnv-seq with custom bugfix☆10Updated 11 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Whole genome workflows☆12Updated 3 months ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- ☆11Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆27Updated 7 months ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆8Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- ☆11Updated last year
- Third-generation fusion gene detection☆14Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 8 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 2 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆18Updated 2 years ago