zic12345 / SR2019Links
☆12Updated 2 years ago
Alternatives and similar repositories for SR2019
Users that are interested in SR2019 are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- ☆15Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ☆51Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 3 weeks ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Updated 8 months ago
- Official code repository for JAX-CNV☆12Updated 5 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 5 months ago
- Third-generation fusion gene detection☆14Updated 2 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆23Updated 2 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆23Updated 8 months ago
- ☆36Updated 2 years ago
- This is a read-only mirror of the CRAN R package repository. sequenza — Copy Number Estimation from Tumor Genome Sequencing Data. Homep…☆20Updated 6 years ago
- ☆25Updated last year