zic12345 / SR2019Links
☆12Updated 3 years ago
Alternatives and similar repositories for SR2019
Users that are interested in SR2019 are comparing it to the libraries listed below
Sorting:
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Updated 4 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 8 months ago
- ☆15Updated 4 years ago
- Computes various SV statistics☆14Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 10 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 6 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Updated 10 months ago
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 5 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 8 months ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 5 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- CNV Rapid Aberration Detection And Reporting☆12Updated 4 years ago
- ☆51Updated 6 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated last month
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago