Alternatives and similar repositories for GeneFuse:

Users that are interested in GeneFuse are comparing it to the libraries listed below

• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆157Updated 5 months ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆240Updated 3 months ago
• OpenGene / gencore
  Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
  ☆116Updated last year
• OpenGene / MutScan
  Detect and visualize target mutations by scanning FastQ files directly
  ☆150Updated 3 years ago
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆156Updated last year
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆127Updated 3 years ago
• ndaniel / fusioncatcher
  Finder of Somatic Fusion Genes in RNA-seq data
  ☆145Updated last year
• AstraZeneca-NGS / VarDict
  VarDict
  ☆192Updated last year
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆179Updated this week
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆211Updated 7 months ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆141Updated last year
• shiquan / bamdst
  a lightweight bam file depth statistical tool
  ☆149Updated 5 months ago
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆209Updated 4 years ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆150Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆96Updated 9 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆203Updated 3 months ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 7 months ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆195Updated 3 years ago
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆140Updated 2 years ago
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆132Updated last month
• genome / breakdancer
  SV detection from paired end reads mapping
  ☆117Updated 5 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆266Updated last year
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆237Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆203Updated 2 months ago
• Illumina / ExpansionHunter
  A tool for estimating repeat sizes
  ☆187Updated last year
• abyzovlab / CNVnator
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
  ☆213Updated 3 years ago
• xie186 / ViewBS
  ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data
  ☆85Updated 4 months ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• niu-lab / msisensor2
  Microsatellite instability (MSI) detection for tumor only data.
  ☆100Updated 9 months ago