OpenGene / GeneFuseLinks
Gene fusion detection and visualization
☆131Updated 3 years ago
Alternatives and similar repositories for GeneFuse
Users that are interested in GeneFuse are comparing it to the libraries listed below
Sorting:
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆175Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 3 years ago
- WisecondorX — An evolved WISECONDOR☆109Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- a lightweight bam file depth statistical tool☆160Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆148Updated 4 months ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆91Updated 4 months ago
- VarDict☆201Updated 2 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 5 years ago
- Microsatellite instability (MSI) detection for tumor only data.☆112Updated last year
- A structural variation pipeline for short-read sequencing☆200Updated this week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Software program for checking sample matching for NGS data☆137Updated last year
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99Updated last year
- ☆57Updated 5 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- SV detection from paired end reads mapping☆118Updated 6 years ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆157Updated 3 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆114Updated last year
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- ☆36Updated 4 years ago
- ABRA2☆95Updated 3 years ago
- Reference data: BED files, genes, transcripts, variations.☆88Updated 8 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Updated 9 months ago
- Structural variation and indel detection by local assembly☆250Updated 4 months ago
- Helper scripts for biological data processing from Sentieon☆64Updated 3 months ago