OpenGene / GeneFuseLinks
Gene fusion detection and visualization
☆128Updated 3 years ago
Alternatives and similar repositories for GeneFuse
Users that are interested in GeneFuse are comparing it to the libraries listed below
Sorting:
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆167Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆123Updated last year
- a lightweight bam file depth statistical tool☆153Updated 11 months ago
- WisecondorX — An evolved WISECONDOR☆101Updated last week
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 years ago
- VarDict☆198Updated last year
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- A structural variation pipeline for short-read sequencing☆193Updated this week
- Discovering known and novel miRNAs from small RNA sequencing data☆153Updated last year
- TransVar - multiway annotator for precision medicine☆126Updated 2 years ago
- Structural variation and indel detection by local assembly☆247Updated this week
- Software program for checking sample matching for NGS data☆134Updated last year
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆87Updated last month
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 3 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆153Updated 3 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆202Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆197Updated 3 weeks ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated last month
- Microsatellite instability (MSI) detection for tumor only data.☆108Updated last year
- ☆36Updated 4 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆109Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- Copy number calling and variant classification using targeted short read sequencing☆138Updated this week
- ☆57Updated 5 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆113Updated last year
- Helper scripts for biological data processing from Sentieon☆64Updated last week