WGLab / PennCNV2Links
A software package for detection of copy number alterations from tumor samples
☆12Updated 10 years ago
Alternatives and similar repositories for PennCNV2
Users that are interested in PennCNV2 are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- ☆51Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆31Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 5 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- ☆25Updated last year
- Integrative analysis of structural variations.☆40Updated last year
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆23Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated 3 weeks ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆30Updated 2 weeks ago