WGLab / PennCNV2Links
A software package for detection of copy number alterations from tumor samples
☆12Updated 10 years ago
Alternatives and similar repositories for PennCNV2
Users that are interested in PennCNV2 are comparing it to the libraries listed below
Sorting:
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 11 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 4 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- ☆24Updated 10 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- ☆21Updated 2 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- ☆51Updated 5 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆18Updated last week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Third-generation fusion gene detection☆14Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 3 years ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago