A software package for detection of copy number alterations from tumor samples
☆12May 8, 2015Updated 10 years ago
Alternatives and similar repositories for PennCNV2
Users that are interested in PennCNV2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated last month
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- IMSindel: An accurate intermediate-size indel detection tool incorporating de novo assembly and gapped global-local alignment with split …☆16Aug 22, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Kpostal package can search for Korean postal addresses using Kakao postcode service.☆12Jun 2, 2025Updated 9 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆22Dec 14, 2021Updated 4 years ago
- Filter and prioritize fusion calls☆20Feb 24, 2026Updated last month
- circos pipeline☆20May 8, 2021Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Oct 19, 2021Updated 4 years ago
- Copy number vaiation detection from SNP arrays☆96May 19, 2024Updated last year
- ☆21Feb 13, 2020Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- SARS-CoV-2 Deep Sequencing☆14Apr 22, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Kdrew's scripts for handling protein complex map data☆14Jun 12, 2025Updated 9 months ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Mar 8, 2019Updated 7 years ago
- HiDeF (Hierarchical community Decoding Framework)☆15Jan 30, 2024Updated 2 years ago
- Work supporting the comparison of SnpEff and VEP effect prediction and HGVS identifiers☆11Mar 15, 2017Updated 9 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- visualize CNV data from targeted capture based sequencing data☆34May 10, 2021Updated 4 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- Ontology for Immune Epitopes