analysis pipeline for CODEC data
☆13Apr 8, 2026Updated last week
Alternatives and similar repositories for CODECsuite
Users that are interested in CODECsuite are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Sep 22, 2025Updated 6 months ago
- Summary of a single or multiple MAF files.☆13Feb 5, 2025Updated last year
- Python package for cancer early detection based on a model of cancer evolution and circulating tumor DNA (ctDNA) shedding☆13Jan 8, 2021Updated 5 years ago
- ☆13Feb 14, 2023Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- ☆13Jan 18, 2017Updated 9 years ago
- ☆27Feb 9, 2026Updated 2 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆72Apr 8, 2026Updated last week
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Jun 25, 2019Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 9 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Jun 6, 2023Updated 2 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.☆16Aug 16, 2024Updated last year
- materials and website for the 2016 kallisto sleuth workshop☆11Nov 7, 2016Updated 9 years ago
- ☆15Aug 1, 2021Updated 4 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆20Mar 28, 2026Updated 3 weeks ago
- Very large scale k-mer counting and analysis on Apache Spark.☆18Mar 2, 2026Updated last month
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago
- Suite of tools to conduct methylation data analysis. Methods from this workspace can be used for alignment and quality control analysis f…☆20Nov 19, 2020Updated 5 years ago
- Efficient merging of structural variants from multiple SV callers and samples☆36Mar 27, 2026Updated 3 weeks ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- A Julia package for extracting mutation signatures using topic models☆19Feb 23, 2022Updated 4 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Analysis from kallisto paper☆32Feb 10, 2016Updated 10 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- FQSqueezer - FASTQ compressor based on k-mer statistics☆17Feb 24, 2024Updated 2 years ago
- An R package to time somatic mutations☆69Dec 12, 2020Updated 5 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 5 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆42Aug 17, 2021Updated 4 years ago
- ☆25Jan 18, 2022Updated 4 years ago
- Supporting material for publication: "Ovarian cancer mutational processes drive site-specific immune evasion"☆24May 10, 2025Updated 11 months ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago