KChen-lab / Texomer
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data
☆20Updated 4 years ago
Alternatives and similar repositories for Texomer:
Users that are interested in Texomer are comparing it to the libraries listed below
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆15Updated last year
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆28Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆19Updated 6 years ago
- CNV detection tool for targeted NGS panel data☆16Updated 2 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆16Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 6 months ago
- ☆8Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 2 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 8 years ago
- Workflow for Sequenza, cellularity and ploidy☆19Updated 7 months ago
- ☆13Updated 6 months ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- Filter and prioritize fusion calls☆20Updated 4 months ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆28Updated 4 months ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆18Updated 2 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 5 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- ☆10Updated 4 years ago
- ☆34Updated 5 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated 9 months ago
- ☆23Updated 3 years ago