a lightweight bam file depth statistical tool
☆161Sep 13, 2024Updated last year
Alternatives and similar repositories for bamdst
Users that are interested in bamdst are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆114Mar 28, 2024Updated last year
- Microsatellite instability (MSI) detection for tumor only data.☆114Apr 23, 2024Updated last year
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Jan 6, 2021Updated 5 years ago
- ☆36Mar 16, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆127Oct 27, 2023Updated 2 years ago
- A bioinformatics software tool for clinical interpretation of genetic variants by the 2015 ACMG-AMP guideline☆207May 28, 2023Updated 2 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Jun 12, 2022Updated 3 years ago
- Characterization of Germline variants☆100Mar 15, 2022Updated 4 years ago
- ☆122Sep 5, 2023Updated 2 years ago
- VarDict☆203Jan 5, 2024Updated 2 years ago
- Strelka2 germline and somatic small variant caller☆390Dec 29, 2021Updated 4 years ago
- Detect and visualize target mutations by scanning FastQ files directly☆158Feb 10, 2022Updated 4 years ago
- Detect and visualize microsatellite instability(MSI) from NGS data☆33Jun 4, 2019Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Tools for working with SAM/BAM data☆607Dec 22, 2024Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated 3 weeks ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆831Feb 10, 2026Updated last month
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 3 years ago
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆540Mar 4, 2026Updated 3 weeks ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆158Feb 12, 2026Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated 11 months ago
- An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)☆2,308Updated this week
- Structural variant and indel caller for mapped sequencing data☆460Oct 11, 2025Updated 5 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TransVar - multiway annotator for precision medicine☆127Apr 19, 2023Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆20Feb 20, 2021Updated 5 years ago
- A standalone end-to-end data analysis pipeline for Duplex Sequencing☆21Oct 25, 2023Updated 2 years ago
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆99May 21, 2024Updated last year
- ☆89Nov 11, 2020Updated 5 years ago
- Annotation and Ranking of Structural Variation☆290Mar 17, 2026Updated last week
- A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file☆20Oct 26, 2020Updated 5 years ago
- Helper scripts for biological data processing from Sentieon☆65Jan 27, 2026Updated last month
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- Third-generation fusion gene detection☆13Jul 25, 2023Updated 2 years ago
- 肿瘤突变负荷学习笔记(tumor mutation burden)☆16Dec 10, 2019Updated 6 years ago
- Workflows for germline short variant discovery with GATK4☆139May 7, 2021Updated 4 years ago
- Copy number variant detection from targeted DNA sequencing☆606Mar 11, 2026Updated 2 weeks ago
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- FusionInspector code☆59Updated this week