shiquan / bamdstLinks
a lightweight bam file depth statistical tool
☆156Updated last year
Alternatives and similar repositories for bamdst
Users that are interested in bamdst are comparing it to the libraries listed below
Sorting:
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- VarDict☆198Updated last year
- WisecondorX — An evolved WISECONDOR☆105Updated 2 months ago
- Gene fusion detection and visualization☆128Updated 3 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- A structural variation pipeline for short-read sequencing☆194Updated this week
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last month
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆110Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆125Updated 2 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆205Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆225Updated 3 months ago
- Structural variation and indel detection by local assembly☆248Updated last month
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- ☆136Updated 3 weeks ago
- Annotation and Ranking of Structural Variation☆263Updated 3 weeks ago
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆189Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆245Updated 3 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆109Updated 2 years ago
- Full-Length Alternative Isoform analysis of RNA☆237Updated this week
- Microsatellite instability (MSI) detection for tumor only data.☆110Updated last year
- A tool for estimating repeat sizes☆198Updated last year
- A minimap2 frontend for PacBio native data formats☆205Updated last month
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- A tool for profiling long STRs from short reads☆100Updated 4 years ago