shiquan / bamdstLinks
a lightweight bam file depth statistical tool
☆157Updated last year
Alternatives and similar repositories for bamdst
Users that are interested in bamdst are comparing it to the libraries listed below
Sorting:
- WisecondorX — An evolved WISECONDOR☆107Updated 2 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆230Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Gene fusion detection and visualization☆127Updated 3 years ago
- VarDict☆200Updated last year
- Workflows for germline short variant discovery with GATK4☆138Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆172Updated last year
- Generate duplex/single consensus reads to reduce sequencing noises and remove duplications☆126Updated 2 years ago
- A Tool for integrated Quality Control and Preprocessing on FASTQ or BAM/CRAM files☆111Updated last year
- A minimap2 frontend for PacBio native data formats☆205Updated this week
- Annotation and Ranking of Structural Variation☆267Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆161Updated 7 months ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- Structural variation and indel detection by local assembly☆249Updated 2 months ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- A structural variation pipeline for short-read sequencing☆195Updated this week
- Finder of Somatic Fusion Genes in RNA-seq data☆146Updated 2 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆226Updated 4 months ago
- microsatellite instability detection using tumor only or paired tumor-normal data☆132Updated 4 years ago
- A tool for estimating repeat sizes☆199Updated last year
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆192Updated 4 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆250Updated 4 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆154Updated last year
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 8 months ago
- ☆153Updated 5 months ago
- A lightweight and handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysi…☆140Updated 6 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- Software program for checking sample matching for NGS data☆136Updated last year