Gene Fusion Visualiser
☆52Jan 15, 2023Updated 3 years ago
Alternatives and similar repositories for Clinker
Users that are interested in Clinker are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predicting oncogenic potential of gene fusions☆13Feb 13, 2016Updated 10 years ago
- ☆16May 8, 2023Updated 2 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆39Nov 25, 2023Updated 2 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆267Sep 21, 2025Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Python package to annotate and visualize gene fusions.☆67Sep 30, 2024Updated last year
- Fast fusion detection using kallisto☆79Jun 11, 2025Updated 10 months ago
- FusionInspector code☆59Apr 1, 2026Updated last week
- ALLSorts is a B-Cell Acute Lymphoblastic Leukemia (B-ALL) subtype classifier. From gene expression counts to over 18 subtypes.☆17Jul 30, 2025Updated 8 months ago
- STAR-Fusion codebase☆250Oct 4, 2025Updated 6 months ago
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆12Sep 4, 2022Updated 3 years ago
- FLT3 ITD detection (ITDseek) and simulation (ITDsim)☆14Feb 27, 2019Updated 7 years ago
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Jun 22, 2022Updated 3 years ago
- (No maintenance) Detect gene fusion directly from raw fastq files☆25Aug 13, 2017Updated 8 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.☆14Nov 11, 2019Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆24Jul 15, 2021Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Apr 17, 2024Updated last year
- ☆46Nov 18, 2019Updated 6 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Gene fusion detection and visualization☆133Feb 21, 2022Updated 4 years ago
- Msuite2: integrated DNA methylation data analysis toolkit with enhanced performance☆10Jan 21, 2025Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 7 years ago
- Annotation and Prediction of Oncogenic Gene Fusions in RNAseq☆12Feb 20, 2016Updated 10 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- An automated post sequencing data processing pipeline for Illumina HiSeq☆14Aug 28, 2025Updated 7 months ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆108Apr 2, 2026Updated last week
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 7 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- RNA-seq analysis pipeline for detection of gene-fusions☆173Mar 18, 2026Updated 3 weeks ago
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 8 years ago
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated 10 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆30Dec 5, 2019Updated 6 years ago
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 6 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆115Apr 2, 2025Updated last year