dayedepps / q30Links
A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)
☆13Updated 9 years ago
Alternatives and similar repositories for q30
Users that are interested in q30 are comparing it to the libraries listed below
Sorting:
- fastx-utils using klib☆19Updated 4 years ago
- ☆14Updated 7 years ago
- Plant small RNA target prediction tool☆26Updated 8 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 3 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆29Updated last year
- A bioinformatics tool for SV detection and virus integration discovery☆20Updated 7 years ago
- an R/Shiny application for interactive creation of Circos plot☆48Updated 2 years ago
- Adapters for trimming☆30Updated 6 years ago
- A collection of command line tools for working with sequencing data☆51Updated last week
- ☆25Updated last year
- Long read to rMATS☆32Updated 2 years ago
- ☆17Updated 2 weeks ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- iTAK☆41Updated last year
- Evolutionary Transcriptomics with R☆45Updated this week
- A software for calculating telomere length☆70Updated 6 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- ☆51Updated 6 years ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆37Updated 4 months ago
- Command-line utility to color objects of a KEGG pathway with arbitrary colors☆34Updated 10 years ago
- Error correction of ONT transcript reads☆58Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Updated 9 months ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 5 years ago