Alternatives and similar repositories for q30:

Users that are interested in q30 are comparing it to the libraries listed below

• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆21Updated 6 years ago
• YaoLab-Bioinfo / shinyChromosome
  an R/Shiny application for interactive creation of non-circular plots of whole genomes
  ☆45Updated 2 years ago
• sdchandra / CNAclinic
  ☆23Updated 8 months ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 2 years ago
• YaoLab-Bioinfo / ECOGEMS
  Efficient compression and retrieve of genotype data with integer sparse matrices
  ☆16Updated last week
• ajmazurie / kegg-animate-pathway
  Command-line utility to color objects of a KEGG pathway with arbitrary colors
  ☆33Updated 9 years ago
• carringtonlab / TargetFinder
  Plant small RNA target prediction tool
  ☆26Updated 8 years ago
• hangelwen / miR-PREFeR
  microRNA PREdiction From small RNA-seq data
  ☆29Updated 7 years ago
• YuLab-SMU / MicrobiomeProfiler
  A shiny package for microbiome functional enrichment analysis
  ☆37Updated this week
• AGIScuipeng / PMPrimer
  Automatically design multiplex PCR primer pairs for diverse templates
  ☆26Updated 11 months ago
• zyndagj / BSMAPz
  Updated and optimized fork of BSMAP
  ☆22Updated 4 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated last month
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆15Updated last year
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• namphuon / ViFi
  Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.
  ☆27Updated 3 years ago
• xmao / kobas
  KOBAS: a command line tool for identifying significant pathways from genomic data
  ☆30Updated 15 years ago
• yuhanH / HPViewer
  ☆14Updated 6 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆47Updated 2 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• NYU-BFX / lncRNA-screen
  lncRNA-screen
  ☆25Updated 8 years ago
• niu-lab / msisensor-ct
  Microsatellite instability (MSI) detection for cfDNA samples.
  ☆19Updated 4 years ago
• mskcc / lohhla
  Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs
  ☆30Updated last year
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆48Updated 5 years ago
• SdeBlank / NanoFG
  Third-generation fusion gene detection
  ☆14Updated last year
• sfu-compbio / sinvict
  SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA
  ☆27Updated 4 years ago
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆18Updated 8 months ago