yi-zhang / STHDLinks
STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
☆33Updated 6 months ago
Alternatives and similar repositories for STHD
Users that are interested in STHD are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆42Updated 3 months ago
- ☆30Updated 6 months ago
- cell type specific, trait-associated gene regulation☆29Updated 7 months ago
- Code used to process the data of the HBCA project☆32Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated last year
- ☆23Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated 11 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆10Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 4 years ago
- A record of the analysis pipelines used to create the HTAPP data☆33Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆77Updated 3 months ago
- Computational pipeline to process EasySci-RNA data.☆21Updated last year
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last year
- ☆53Updated 2 years ago
- ☆13Updated last year
- ☆43Updated 2 weeks ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 9 months ago
- ☆24Updated 2 years ago
- ☆23Updated 9 months ago
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆16Updated 11 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆29Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 8 months ago
- ☆60Updated last year
- ☆39Updated 5 months ago
- R and MATLAB scripts for MAGICAL☆11Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 2 weeks ago
- ☆60Updated 2 months ago
- ☆31Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆25Updated last year