Alternatives and similar repositories for RA_Atlas_CITEseq

Users that are interested in RA_Atlas_CITEseq are comparing it to the libraries listed below

• Teichlab / HCA_Heart_ver2
  ☆39Updated 2 years ago
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆88Updated 9 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆27Updated 7 months ago
• kaifuchenlab / MEBOCOST
  ☆27Updated 2 weeks ago
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆50Updated 5 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆55Updated 2 years ago
• bio-Pixel / panVC
  ☆51Updated last year
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆68Updated 8 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆48Updated 2 months ago
• Banovich-Lab / Spatial_PF
  ☆31Updated 2 months ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated last month
• Aleksobrad / single-cell-rcc-pipeline
  Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…
  ☆51Updated 4 years ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆110Updated 5 months ago
• Chuxj / CRC-atlas
  ☆31Updated last year
• Lan-lab / sc-GC
  ☆31Updated 3 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated 9 months ago
• ma-jq / B
  ☆26Updated last year
• califano-lab / PISCES
  R package for Protein activity analysis of single-cell RNAseq.
  ☆83Updated 2 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated 3 weeks ago
• Fraternalilab / sciCSR
  Single-Cell Inference of Class Switch Recombination
  ☆19Updated last week
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆12Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 6 months ago
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• Junjie-Hu / NSCLC-immunotherapy
  ☆25Updated last year
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆12Updated 11 months ago
• QiangShiPKU / CoVarNet
  ☆41Updated last month