Alternatives and similar repositories for RA_Atlas_CITEseq

Users that are interested in RA_Atlas_CITEseq are comparing it to the libraries listed below

• Banovich-Lab / Spatial_PF
  ☆31Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆94Updated 10 months ago
• ma-jq / B
  ☆28Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆65Updated last year
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆58Updated 3 weeks ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆49Updated 4 months ago
• icbi-lab / luca
  Single-cell Lung Cancer Atlas with 1.2M cells
  ☆69Updated 9 months ago
• Teichlab / HCA_Heart_ver2
  ☆40Updated 2 years ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆15Updated 9 months ago
• PansccSpat / SpatialMapESCC
  ☆22Updated last year
• kaifuchenlab / MEBOCOST
  ☆28Updated this week
• christophhmayr / 2023_Mayr
  Code for the spatial transcriptomic paper on IPF lungs
  ☆20Updated last year
• genecell / COSG
  Accurate and fast cell marker gene identification with COSG
  ☆51Updated 2 weeks ago
• hernet / transcriptional-map-nk
  We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…
  ☆13Updated last year
• compbioNJU / scPDAC
  R code used to analyze single cell PDAC data
  ☆40Updated last year
• Chuxj / CRC-atlas
  ☆31Updated last year
• bio-Pixel / panVC
  ☆54Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆28Updated last year
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆54Updated last year
• BKI-immuno-KNS / MANAscore
  A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types
  ☆11Updated 7 months ago
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆56Updated 2 years ago
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• bioinfo-biols / SEVtras
  sEV-containing droplet identification in scRNA-seq data (SEVtras)
  ☆26Updated 8 months ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆100Updated 4 months ago
• Teichlab / PanGIAtlas
  Integration of gut cell atlases
  ☆28Updated this week
• lifei176 / Single-cell-atlas-of-sex-differences-and-androgen-effects
  ☆17Updated last year
• KnottLab / pembroRT-CancerCell2023
  Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.
  ☆12Updated 2 years ago
• ImmucanWP7 / immucan-scdb
  ☆17Updated 2 years ago
• Sanofi-Public / enact-pipeline
  Repository for ENACT pipeline for end-to-end analysis of Visium HD data
  ☆66Updated 4 months ago