immunogenomics / RA_Atlas_CITEseq
RA Synovial Single-cell Multimodal Cell Atlas
☆12Updated 11 months ago
Alternatives and similar repositories for RA_Atlas_CITEseq:
Users that are interested in RA_Atlas_CITEseq are comparing it to the libraries listed below
- R implementation of GeneTrajectory☆52Updated 10 months ago
- Gene group activity utility functions for Scanpy☆67Updated 2 months ago
- Accurate and fast cell marker gene identification with COSG☆41Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆59Updated last month
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 6 months ago
- Functions for single cell data analysis☆29Updated 3 years ago
- ☆16Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆46Updated last year
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated 2 months ago
- ☆44Updated 9 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆24Updated last month
- Scripts and notebooks to reproduce all analysis from Massoni-Badosa et al. (2022)☆28Updated last month
- ☆28Updated 3 months ago
- ☆24Updated 8 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- ☆18Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆40Updated 3 months ago
- ☆16Updated last year
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆42Updated last year
- Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcin…☆45Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆39Updated last year
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- Single cell omics biology annotations☆49Updated 3 weeks ago
- ☆19Updated last year
- ☆12Updated 2 years ago
- ☆17Updated 11 months ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆50Updated 4 months ago
- Single-Cell Inference of Class Switch Recombination☆18Updated 6 months ago