Public repo for STEP: Spatial Transcriptomics Embedding Procedure
☆17Nov 13, 2024Updated last year
Alternatives and similar repositories for step
Users that are interested in step are comparing it to the libraries listed below
Sorting:
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated 11 months ago
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- ☆15Feb 20, 2025Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 10 months ago
- Database for collecting and curating scientific papers related to single-cell and spatial transcriptomics sequencing.☆14Oct 5, 2025Updated 4 months ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆76Feb 10, 2026Updated 2 weeks ago
- R code used to analyze single cell PDAC data☆41Jun 29, 2024Updated last year
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆195Feb 12, 2026Updated 2 weeks ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Feb 20, 2025Updated last year
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆21Nov 15, 2016Updated 9 years ago
- ☆21Mar 4, 2024Updated last year
- ☆30Jan 3, 2025Updated last year
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- my personal blog by astro☆24Mar 26, 2025Updated 11 months ago
- Spatial One☆30Oct 31, 2024Updated last year
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last week
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆60Jul 22, 2024Updated last year
- ☆31May 4, 2025Updated 9 months ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- Optimized sequence graph implementations for graph genomics☆34Feb 16, 2026Updated last week
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 8 months ago
- Whole Genome Alignment Tools☆215Nov 6, 2025Updated 3 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Aug 11, 2025Updated 6 months ago
- This project is a Graphical User Interface frontend for GlycoGenius, a python program that aims to be an all-in-one solution for data ana…☆15Jan 25, 2026Updated last month
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆14Dec 29, 2025Updated 2 months ago
- ☆40Feb 12, 2026Updated 2 weeks ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆41Aug 20, 2025Updated 6 months ago
- Phased structural variant discovery in pangenomes☆39Dec 9, 2025Updated 2 months ago
- ☆47Apr 8, 2025Updated 10 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆111Jun 9, 2025Updated 8 months ago
- Single-cell genomic sequencing of the human gut microbiome☆12Jun 12, 2024Updated last year
- geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics☆11Sep 17, 2021Updated 4 years ago
- ☆10Dec 2, 2025Updated 2 months ago
- ☆11Apr 10, 2022Updated 3 years ago
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A Network Integration Approach for Drug-Target Interaction Prediction☆13Apr 5, 2025Updated 10 months ago
- ☆12Jan 31, 2023Updated 3 years ago