SGGb0nd / step
Public repo for STEP: Spatial Transcriptomics Embedding Procedure
☆12Updated last week
Related projects ⓘ
Alternatives and complementary repositories for step
- Cell Annotation using Machine Learning-based method for the presence of Unknown cells (CAMLU)☆11Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆43Updated 2 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated 2 months ago
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆34Updated 6 months ago
- ☆22Updated 3 weeks ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- Python implementation of Gene Trajectory☆20Updated 2 months ago
- Multi-modal single cell analysis pipelines☆55Updated this week
- The scripts used for the analyses in TOME project☆21Updated 11 months ago
- ☆48Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 11 months ago
- ☆37Updated 10 months ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆25Updated 3 years ago
- ☆11Updated last year
- Unified access to several second-generation deconvolution methods☆56Updated 3 weeks ago
- BioTIP: Biological Tipping-Point Identification and Characterization☆18Updated 5 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆39Updated 4 months ago
- Multiview Intercellular SpaTial modeling framework☆49Updated 8 months ago
- R package for analysing single cell data☆48Updated last year
- TACCO: Transfer of Annotations to Cells and their COmbinations☆44Updated 4 months ago
- Codes used in LISTA project.☆10Updated 7 months ago
- single-cell decorrelated module networks☆18Updated 3 months ago
- ☆53Updated 10 months ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated last week
- ☆14Updated last year
- R package to detect breakpoints and assign somies to scATAC-seq data☆33Updated 2 months ago
- ☆42Updated 4 years ago
- Pan-Cancer Single Cell Classifier☆61Updated 5 months ago