Public repo for STEP: Spatial Transcriptomics Embedding Procedure
☆17Nov 13, 2024Updated last year
Alternatives and similar repositories for step
Users that are interested in step are comparing it to the libraries listed below
Sorting:
- Adata Viewer: Head/Less/Shape h5ad file in terminal☆12Mar 19, 2025Updated last year
- qsub command for serveral cluster engine☆14Jan 14, 2025Updated last year
- The current study provides a comprehensive insights into the PDAC metastatic biology.☆25Aug 3, 2024Updated last year
- ☆15Feb 20, 2025Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆37Apr 30, 2025Updated 10 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆43Feb 20, 2025Updated last year
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆77Feb 10, 2026Updated last month
- Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.☆197Mar 13, 2026Updated last week
- ☆21Mar 4, 2024Updated 2 years ago
- R code used to analyze single cell PDAC data☆41Jun 29, 2024Updated last year
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- Whole Genome Alignment Tools☆216Nov 6, 2025Updated 4 months ago
- ☆31May 4, 2025Updated 10 months ago
- ☆32Jan 3, 2025Updated last year
- Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data☆60Jul 22, 2024Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Jul 13, 2024Updated last year
- Database for collecting and curating scientific papers related to single-cell and spatial transcriptomics sequencing.☆14Oct 5, 2025Updated 5 months ago
- The AnnSQL package enables SQL based queries on AnnData objects.☆41Aug 20, 2025Updated 7 months ago
- my personal blog by astro☆24Mar 26, 2025Updated 11 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆51Aug 11, 2025Updated 7 months ago
- Optimized sequence graph implementations for graph genomics☆34Feb 27, 2026Updated 3 weeks ago
- ☆15Mar 13, 2026Updated last week
- ☆41Feb 12, 2026Updated last month
- A Rust-powered Jupyter kernel supervisor for Neovim☆37Jan 8, 2026Updated 2 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆12Apr 5, 2025Updated 11 months ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 9 months ago
- A terminal user interface (TUI) application for navigating and viewing HDF5 files☆16May 27, 2025Updated 9 months ago
- ☆25Jan 9, 2024Updated 2 years ago
- Assessing enrichment of complex disease or trait associations among QTLs☆15Jun 15, 2020Updated 5 years ago
- Phased structural variant discovery in pangenomes☆39Mar 14, 2026Updated last week
- ☆21Jul 25, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Automatically annotate cell types, consistently across samples.☆19Updated this week
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated last year
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆14Dec 29, 2025Updated 2 months ago
- A tool for motif annotation and visualization in tandem repeats.☆11May 26, 2025Updated 9 months ago
- Senescent Cell Identification☆51Feb 22, 2024Updated 2 years ago