Alternatives and similar repositories for enact-pipeline

Users that are interested in enact-pipeline are comparing it to the libraries listed below

• aerickso / SpatialInferCNV
  Clone Calling from Visium Spatial Transcriptomics of Cancer samples
  ☆70Updated 2 years ago
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆52Updated last month
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆100Updated 2 weeks ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆65Updated 7 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆74Updated 9 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆43Updated 6 months ago
• navinlabcode / CellTrek
  ☆119Updated 3 years ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆104Updated last month
• campbio / decontX
  Methods for decontamination of single cell data
  ☆45Updated 3 months ago
• zhengrongbin / MEBOCOST
  A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data
  ☆74Updated 6 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆106Updated 2 months ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆66Updated last month
• Banovich-Lab / Spatial_PF
  ☆28Updated 3 months ago
• prabhakarlab / Banksy
  BANKSY: spatial clustering
  ☆111Updated 2 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆128Updated 3 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆58Updated 11 months ago
• ccruizm / GBmap
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆56Updated 2 years ago
• tiroshlab / 3ca
  Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".
  ☆112Updated 8 months ago
• Nanostring-Biostats / CosMx-Analysis-Scratch-Space
  This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…
  ☆64Updated last week
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆82Updated 2 weeks ago
• theislab / spatial_scog_workshop_2022
  Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022
  ☆53Updated 2 years ago
• Teichlab / HCA_Heart_ver2
  ☆35Updated last year
• Coolgenome / iTALK
  ☆61Updated 5 years ago
• Goldrathlab / Spatial-TRM-paper
  ☆17Updated 3 months ago
• jlaffy / scalop
  Single Cell Analysis Operations
  ☆13Updated 2 months ago
• wagnerlab-berkeley / Compass
  ☆22Updated 2 months ago
• BostonGene / MFP
  Mollecular Functional Portraits
  ☆40Updated last year
• YosefLab / popV
  ☆76Updated this week
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆111Updated last month
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆49Updated last year