Sanofi-Public / enact-pipelineLinks
Repository for ENACT pipeline for end-to-end analysis of Visium HD data
☆51Updated last week
Alternatives and similar repositories for enact-pipeline
Users that are interested in enact-pipeline are comparing it to the libraries listed below
Sorting:
- Clone Calling from Visium Spatial Transcriptomics of Cancer samples☆71Updated 2 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆52Updated last month
- Join subcellular Visium HD bins into cells☆111Updated last month
- BANKSY: spatial clustering☆112Updated last week
- Code used to benchmark Xenium☆63Updated 11 months ago
- Construct Tumor Transition Zone Microenvironment☆44Updated 7 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆66Updated 8 months ago
- ☆120Updated 3 years ago
- A tool for semi-automatic cell type harmonization and integration☆107Updated 2 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆80Updated last week
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 3 years ago
- ☆50Updated last year
- ☆22Updated 2 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆116Updated 9 months ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained her…☆70Updated this week
- ☆36Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆129Updated 4 months ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆76Updated 7 months ago
- ☆78Updated last week
- Methods for decontamination of single cell data☆47Updated 4 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆105Updated last month
- ☆38Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆82Updated last year
- Single-cell Lung Cancer Atlas with 1.2M cells☆63Updated 5 months ago
- ☆52Updated 9 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆35Updated 4 months ago
- ☆28Updated 3 months ago
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆75Updated 3 months ago