Repository for ENACT pipeline for end-to-end analysis of Visium HD data
☆80Feb 10, 2026Updated 3 months ago
Alternatives and similar repositories for enact-pipeline
Users that are interested in enact-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 weeks ago
- Spatial One☆30Oct 31, 2024Updated last year
- STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition☆38Apr 30, 2025Updated last year
- EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce).☆13Oct 2, 2024Updated last year
- ☆33May 4, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆17Nov 13, 2024Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆115Jun 9, 2025Updated 11 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆279May 22, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆168May 6, 2025Updated last year
- Spatial omics analysis toolbox☆374Updated this week
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆36Jan 13, 2026Updated 4 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19May 18, 2025Updated last year
- ☆13Jun 6, 2024Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 9 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- BANKSY: spatial clustering☆147Updated this week
- ☆37Oct 22, 2025Updated 7 months ago
- Comprehensive analysis of single cell RNAseq and spatial transcriptomics in human acute and chronic wounds☆15Mar 19, 2025Updated last year
- Python package to predict enhancer-gene interactions supervised on CRISPRi data☆15Nov 21, 2023Updated 2 years ago
- Pipeline for SpatialTranscriptomics and 10X Visium data☆22Jul 22, 2025Updated 10 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 3 months ago
- Conversion between scRNA-seq objects