Gene-based test of allele-specific expression without requiring haplotype information
☆16Mar 20, 2018Updated 8 years ago
Alternatives and similar repositories for geneiase
Users that are interested in geneiase are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- personal genome constructor☆10May 29, 2025Updated 10 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Portable database of microhaplotype marker and allele frequency data☆11Oct 2, 2025Updated 6 months ago
- Scripts for Shi et al. (2024). The suer-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread …☆18Apr 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- R package for haplotype phasing using single-cell RNA-seq data☆13Aug 22, 2017Updated 8 years ago
- Personal diploid genome creation and coordinate conversion☆30Apr 1, 2025Updated last year
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 2 years ago
- Bioinformatics lecture slides 2014☆11Jun 26, 2016Updated 9 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆15Aug 18, 2025Updated 7 months ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Allele frequency filter app☆14May 4, 2022Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆45Jul 23, 2025Updated 8 months ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- Analysis scripts from the paper "Eight thousand years of natural selection in Europe".☆11Nov 19, 2015Updated 10 years ago
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 6 years ago
- [DEPRECATED] An R package to rapidly build and deploy supervised machine learning workflows☆16Jul 25, 2019Updated 6 years ago
- SV genotyper for long reads with a variation graph☆16Aug 11, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆49Sep 22, 2025Updated 6 months ago
- Software for interpretation of complex DNA profiles☆17Feb 20, 2026Updated last month
- Improved contact predictions using the recognition of protein like contact patterns.☆14May 18, 2018Updated 7 years ago
- microhaplotype visualizer and analyzer☆20Jun 24, 2021Updated 4 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- Protect your python source code with one command.☆10Mar 12, 2020Updated 6 years ago
- WIP : regular expressions for identifying and extracting values from HGVS nomenclature☆14Apr 15, 2018Updated 8 years ago
- Call select base modifications in PacBio HiFi reads☆16Mar 4, 2026Updated last month
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- Benchmarking variant calling in polyploids☆15Nov 26, 2021Updated 4 years ago
- A python parser to simplify and build the VCF (Variant Call Format).☆49Oct 30, 2024Updated last year
- ☆22Jan 13, 2017Updated 9 years ago
- Apify actor to run web spiders written in Python in the Scrapy library☆12Dec 11, 2022Updated 3 years ago
- Genome haplotype assembly and assessment method☆12Nov 24, 2023Updated 2 years ago