BOSTIn is a new, user-friendly phylogenetic artifact identification package.
☆11Jun 12, 2026Updated 2 weeks ago
Alternatives and similar repositories for BOSTIn
Users that are interested in BOSTIn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆16Apr 11, 2026Updated 2 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆16Jun 6, 2024Updated 2 years ago
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆12Jun 19, 2025Updated last year
- Bayesian species delimitation integrating genes and traits☆12Aug 17, 2021Updated 4 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- Phylogenetic profiling with orthology data☆13May 11, 2026Updated last month
- Improved Inference of Ortholog Groups using Hidden Markov Models☆39May 12, 2026Updated last month
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- ☆22Jan 29, 2024Updated 2 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated 9 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆28Oct 14, 2019Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Feb 23, 2026Updated 4 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆53Feb 8, 2026Updated 4 months ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- distance based phylogenetic placement☆28Feb 28, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Snakemake pipeline to analyze transposable element 'omics data.☆33Updated this week
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 7 years ago
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated 3 weeks ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 5 months ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Updated this week
- ☆33Jul 9, 2024Updated last year
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Aug 3, 2023Updated 2 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- Reduce genome assembly redundancy using shared mapped k-mer method.☆15Apr 28, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- MP-EST estimates species trees from a set of gene trees by maximizing a pseudo-likelihood function☆13Oct 31, 2025Updated 7 months ago