BOSTIn is a new, user-friendly phylogenetic artifact identification package.
☆13Jul 11, 2026Updated 3 months ago
Alternatives and similar repositories for BOSTIn
Users that are interested in BOSTIn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Serial of Similarity Matrix for subgenome partition☆11Feb 6, 2025Updated last year
- ☆16Apr 11, 2026Updated 6 months ago
- Bayesian species delimitation integrating genes and traits☆11Aug 17, 2021Updated 5 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆17Jun 6, 2024Updated 2 years ago
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆18May 27, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Decomposition Into Single-COpy gene trees (DISCO) is a method for decomposing multi-copy gene-family trees while attempting to preserve o…☆13Jun 19, 2025Updated last year
- Inference of Ortholog Groups using Hidden Markov Models☆39Oct 22, 2026Updated last week
- Prepare XML input files for divergence-time estimation with SNAPP☆22Dec 3, 2022Updated 3 years ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆35Jun 12, 2024Updated 2 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- ☆23Jan 29, 2024Updated 2 years ago
- mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization☆24Jun 29, 2026Updated 4 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- Ensemble of HMM methods (SEPP, TIPP, UPP)☆13Oct 2, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 4 years ago
- Phylogenetic profiling with orthology data☆14Updated this week
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- A program for divvying or partially filtering multiple sequence alignments☆29Oct 14, 2019Updated 7 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 3 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- Calculate Hybrid Index and Heterozygosity from SNP data☆17Sep 2, 2025Updated last year
- Phage virion protein classifier☆14Nov 6, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tetemer, an R package and Shiny app for interactively fitting population parameters to k-mer spectra of diploids, triploids, and tetraplo…☆16Jul 30, 2026Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- Code for computing various support scores for internodes☆19Apr 7, 2020Updated 6 years ago
- ☆11Oct 23, 2024Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆12May 30, 2019Updated 7 years ago
- Robust Eukaryotic Annotation Toolkit☆18Feb 28, 2025Updated last year
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆35Jan 15, 2025Updated last year
- ContScout sequence contamination filter tool☆26Dec 28, 2025Updated 10 months ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆53Feb 8, 2026Updated 8 months ago
- Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a sing…☆28May 10, 2020Updated 6 years ago
- Gene tree - species tree reconciliation from gene tree distributions☆44Oct 15, 2026Updated 2 weeks ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago
- Data and scripts used in the oneKP capstone analyses☆15Apr 5, 2022Updated 4 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆25Oct 21, 2026Updated last week