Alternatives and similar repositories for SYNY:

Users that are interested in SYNY are comparing it to the libraries listed below

• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• Gaius-Augustus / Tiberius
  Tiberius is a deep learning gene finder.
  ☆52Updated this week
• daewoooo / SVbyEye
  ☆86Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• DessimozLab / OMArk
  ☆71Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆44Updated 7 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆6Updated 2 months ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆31Updated 2 weeks ago
• rhysf / Synima
  Synteny Imager
  ☆61Updated 7 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆35Updated 4 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆88Updated this week
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated last year
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆95Updated last month
• kjenike / panagram
  ☆61Updated last month
• ThomasArn / genoPlotR_wrapper
  Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…
  ☆14Updated 3 years ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆71Updated last week
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated last month
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆64Updated 6 months ago
• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated 3 weeks ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆70Updated 3 years ago
• phyloacc / PhyloAcc
  PhyloAcc a software to detect the changes of conservation of a genomic region
  ☆30Updated this week
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 7 months ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆33Updated last year
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 2 months ago
• schmeing / gapless
  Gapless provides combined scaffolding, gap-closing and assembly correction with long reads
  ☆35Updated 2 years ago