PombertLab / SYNYLinks
The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
☆44Updated 2 months ago
Alternatives and similar repositories for SYNY
Users that are interested in SYNY are comparing it to the libraries listed below
Sorting:
- k-mer learning materials☆80Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 10 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Tiberius is a deep learning gene finder.☆77Updated last week
- Call select base modifications in PacBio HiFi reads☆13Updated 8 months ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆83Updated this week
- ☆79Updated 2 months ago
- ☆66Updated last month
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆78Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- Synteny Imager☆64Updated 2 months ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Updated 8 months ago
- A tool for evaluating long-read de novo assembly results☆46Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated last month
- Mumemto: multi-MUM and MEM finding across pangenomes☆113Updated last week
- A program for detection of tRNA genes☆69Updated 2 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆112Updated 2 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆20Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 4 months ago
- ☆44Updated 8 years ago
- Genome-Genome circle synteny☆25Updated last year
- ☆33Updated 4 years ago