The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
☆52Feb 8, 2026Updated 2 months ago
Alternatives and similar repositories for SYNY
Users that are interested in SYNY are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 5 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆15Jun 6, 2024Updated last year
- A program for assessing the T2T genome continuity☆95Feb 28, 2026Updated 2 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 4 months ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆11Mar 28, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆20Dec 13, 2023Updated 2 years ago
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- ☆16Apr 16, 2026Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124Feb 24, 2026Updated 2 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆63Apr 17, 2026Updated last week
- Bioinformatics tool for Locus Visualisation☆165Mar 30, 2026Updated last month
- oxford dot plots☆170Apr 21, 2026Updated last week
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- High-precision TE Annotator☆155Dec 4, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆31Mar 3, 2026Updated last month
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- A genome completeness evaluation tool based on miniprot☆238Sep 18, 2025Updated 7 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 7 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Chromosome-level synteny plotting using orthologous regions☆32Sep 19, 2024Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆105Apr 16, 2026Updated last week
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.☆52Dec 9, 2025Updated 4 months ago
- A organelle de novo genome assembly toolkit☆76Feb 22, 2025Updated last year
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Align proteins to genomes with splicing and frameshift☆400Jan 5, 2026Updated 3 months ago
- This is a method to find telomeres and centromeres in plants.☆43Jun 17, 2023Updated 2 years ago
- ☆12Jun 7, 2024Updated last year
- ☆15Jan 28, 2026Updated 3 months ago
- ⛓ Correct misassemblies using linked AND long reads☆63Mar 24, 2026Updated last month
- An R package to infer and analyze synteny networks from protein sequences☆38Jul 23, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Improved Inference of Ortholog Groups using Hidden Markov Models☆39Mar 29, 2026Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- Construct and Analyze the North American Vitis pangenome☆29Aug 19, 2025Updated 8 months ago
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated last month
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- a tool for inferring species tree from sequencing reads☆160Dec 9, 2025Updated 4 months ago
- Robust Eukaryotic Annotation Toolkit☆17Feb 28, 2025Updated last year