Alternatives and similar repositories for twilight

Users that are interested in twilight are comparing it to the libraries listed below

• adamhockenberry / bacphlip
  A python library for predicting phage lifestyle based on genome sequence
  ☆38Updated last year
• raw-lab / MetaCerberus
  Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…
  ☆59Updated 3 months ago
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆59Updated last year
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆42Updated last week
• EBI-Metagenomics / EukCC
  Tool to estimate genome quality of microbial eukaryotes
  ☆38Updated 5 months ago
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆66Updated 8 months ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆33Updated last year
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆29Updated 8 months ago
• gtonkinhill / panstripe
  post processing of bacterial pangenome gene presence/absence matrices
  ☆60Updated 4 months ago
• SWittouck / SCARAP
  A toolkit for prokaryotic comparative genomics
  ☆50Updated 5 months ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆42Updated this week
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆95Updated 10 months ago
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆59Updated this week
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆45Updated this week
• kussell-lab / mcorr
  Inferring bacterial recombination rates from large-scale sequencing datasets.
  ☆43Updated 2 years ago
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆70Updated last month
• EBI-Metagenomics / mettannotator
  ☆72Updated this week
• cmkobel / CompareM2
  🦠📇 Microbial genomes-to-report pipeline
  ☆58Updated 3 weeks ago
• ibe-uw / tiara
  tiara – a tool for DNA sequence classification
  ☆63Updated last year
• JLSteenwyk / PhyKIT
  a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
  ☆73Updated last month
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆65Updated 3 years ago
• ziyewang / MetaBinner
  ☆56Updated last year
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• bluenote-1577 / fairy
  alignment-free coverage calculation for metagenomic binning >100 times faster
  ☆47Updated 4 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆55Updated 2 months ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆43Updated 2 years ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆49Updated last month
• zheminzhou / PEPPAN
  Phylogeny Enhanded Prediction of PAN-genome
  ☆41Updated 5 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆28Updated 7 months ago